| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_1042 |
|---|
| Symbol | cobD |
|---|
| ID | 4902263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 1018107 |
|---|
| End bp | 1019159 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 640134272 |
|---|
| Product | putative threonine-phosphate decarboxylase |
|---|
| Protein accession | YP_001065322 |
|---|
| Protein GI | 126454618 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0079] Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase |
|---|
| TIGRFAM ID | [TIGR01140] L-threonine-O-3-phosphate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0057725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGACG CGCCGATCAC GCACGGCGGC AACCTGCACG AAGCCGCCCT TCGCTACGGC
ATCCCGCGCG ACGCGTGGCT CGATCTGTCG ACGGGCATCA ATCCGCACGG TTTTCCGGTG
CCGCCCGTGC CCGCCGACGC GTGGCGCCGG CTGCCCGAGG ACGACGGCGT GCTCGCCGCG
CACGCGGCGC GCTACTACCG CGCGCCGGGC GCGGCGCACG TGCTGCCCGT CGCGGGCAGC
CAGGCGGCGA TCCGTGCGCT GCCGGCGCTT TTCGCGCGCG GCACGGTCGG CGTCGCGCCG
CTCGCATACA GCGAGTACGC GCCCGCGTTC GCGCGCCACG GCCATTCGGG CGCGCCGCTC
GACTGCGGCG CCGACACGCT GCCCGCCGCG CTCACGTACG CGATCGTCGC CAATCCGAAC
AATCCGACCG CCGAACGCAT CGATCGCACG CGGCTGCTGC GCTGGCACGC GCAACTCGTC
GCGCGCGGCG GCGCGCTGAT CGTCGACGAG GCGTTCGCGG ACGCCGAGAG CGCCGCGCAC
GCGTCGCTCG CCGCGGACAC GCATCGCGAC GGCCTCGTCG TATTGCGCTC GGTCGGCAAG
TTCTTCGGCC TCGCGGGCGT GCGCGCGGGC TTCGCGCTCG CCGCGCCCGC GCTGCTCGCG
CGGCTGCGCG ACGCGCTCGG CGCGTGGACC GTCAGCGGCC CGGCGCGCCA CGCGGTGCTC
GCCGCGTTCG CGGACGCGGC GTGGCAGCAC GCGATGCGCG AGCGGCTCGC GCACGACGGC
GCGCGCCTTG CCGCGCTGCT GCGCGCGCAC GGCTTCGTCA CGCACGCGAC GCCGCTTTTC
AGCTGGAGCG CCGATCCGCG CGCGCACGCG CTGCACGACG CGCTCGCGGC GCGCGGAATC
TGGACGCGCT ACTTCGCGCA CGCGCCGAGC GTGCGCATCG GGCTGCCCGC CGGCGACGAC
GACTGGCGGC GGCTCGAACG CACGCTCGCC GAGTGCGTGC CGACGCTAGC GGCCGCAGCC
GCGCATCCTT CCGAATCGAC CACACGGGAT TGA
|
|---|
| Protein sequence | MADAPITHGG NLHEAALRYG IPRDAWLDLS TGINPHGFPV PPVPADAWRR LPEDDGVLAA
HAARYYRAPG AAHVLPVAGS QAAIRALPAL FARGTVGVAP LAYSEYAPAF ARHGHSGAPL
DCGADTLPAA LTYAIVANPN NPTAERIDRT RLLRWHAQLV ARGGALIVDE AFADAESAAH
ASLAADTHRD GLVVLRSVGK FFGLAGVRAG FALAAPALLA RLRDALGAWT VSGPARHAVL
AAFADAAWQH AMRERLAHDG ARLAALLRAH GFVTHATPLF SWSADPRAHA LHDALAARGI
WTRYFAHAPS VRIGLPAGDD DWRRLERTLA ECVPTLAAAA AHPSESTTRD
|
|---|
| |