Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_0849 |
Symbol | dacB |
ID | 4901883 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | - |
Start bp | 829691 |
End bp | 831379 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640134079 |
Product | D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase |
Protein accession | YP_001065130 |
Protein GI | 126455229 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGCGGACA TTGTAGCGCC GCCGCGCGCG GGAACGGACC TTCGGGCGAT TTCGGCGCTG CTCGCGCGCC GTTTTCTCTA CAATGTGCGG CTTGCGCCAC GCGCGCGCCC GTTGCTCACG TCGCCTTCCG TTCTCCCGCA TTCGTCGATG AATCACCACG CCTGCCGCAT CGCCGCCTCG CCAAGTCCGC CCCCGCCCGC CGCCGTCCGT GCGCGGCGCA CGCTCGCGCG CGGCGCGATG CTCGTCGCCG CGTGCGCCGC GCTCGCGTTC GCCGCGCCCG CCGACGCCCG CAGGAAACCG AAGCCCCCCC GCTATCCGGC CGCGGTGTCG GCCGCGCGCA ACGTGCTGCC CGCCTCGGTG CTCGTCGCGC TGCAGCGCGC GCGCGTGCCG GCGTCGAGCC TGAGCGTCGT CGTCGAGCGG ATCGGCGATC GCACGCCCGC CGTCGCATGG AACGCGAGCC GGCCGATGCA GCCCGCCTCG ACGATGAAAC TCGTGACCAC CTACGCGGGG CTGTCGCTGC TCGGCGCCGA TTATCGCTGG CGTACGAGCG CGTACGCCGA CGGCGACGTC GACGAGAACG GCACGCTGCA CGGCACGCTG TACATCAAGG GCACCGGAGA CCCGAAGCTC GTGCCGGAGG AACTGATCGA CCTCGTCAAC AAGATCCGCC GCGCGGGAAT CGTCAACGTC GACGGCGCGC TCGTGCTCGA CAAGACCTTC TTCGCGCCGC AGACGCGCGA CCTGCCGCCG CTCGACGACG ACGCGAGCGC CCCGTACAAC GTCGGCCCCG ACCCGCTGCT CTACGCGTTC AAGGCGCTGT CGTTCACGGT GACGCCGACC GACAGCGGCG CGATCGCAGT CGACGTCGTG CCGGCGCTCG CGAACCTGAA CGTCGACAAC CGGCTCGTCG AGGGACAGGG CTCGTGCGAC GCGGCGCGCC CGACGCTCGT GACCGATGCG AACGGCGAGC TCACCGCGTC GTTCGCGGGC GACTATCCGC CGAGCTGCGG CCCGACGACG ACCAATCTCG CGGTGCTGAA CCATTCCACG TTCTTCGCGC GCGGCTTTCT CGCGCTGTGG CGGCAGACGG GCGGCTCGTT CTCGGGGACG ATCGCCGAGG GCAAGGTGCC GGGCCGTGCG CGGCCCGTTG CGTCGCACCA CGGCCCGGTG CTGTCGAGCG TCGTGCACGA CATCAACAAG TTCAGCAACA ACGTGATGGC GCGCAACCTG TTCCTCACGA TCGGCGCGGT CGAGCACCGG CCGCCCGCGA CGCCCGCGCA GTCGGCCGAC ACGATCCGCG CGTTCCTCGC GCACAGCGGG CTGCCCACCG ACGGGCTCGC GCTCGAGAAC GGCTCGGGGC TGTCGCGCGA CGAGCGCGTG AGCGCGCTCG GGCTCGCCGA CATGCTGCAG GCGGCCAACG CGAGCCCCGT CGCGCAGGCG TTCGTCGATT CGCTGCCGAT CGCGGGTGTC GACGGCACGA TGCGGAACCG GCTGACGAAC GCACCCGTCG GCGGCAACGC GCACATCAAG ACGGGCACGC TGCGCGACGT GCGCGCGATC GCGGGCTACG TCGCATCGGC GGACGGCTCG AGCTACGTCG TCGTCAGCTT CATCAACGAC GATCGCGCGT CGGCCGCGCG CGCGGCGCAC GACGCGCTGC TCGAATGGGT GTACGAAGGG CCACGCTGA
|
Protein sequence | MADIVAPPRA GTDLRAISAL LARRFLYNVR LAPRARPLLT SPSVLPHSSM NHHACRIAAS PSPPPPAAVR ARRTLARGAM LVAACAALAF AAPADARRKP KPPRYPAAVS AARNVLPASV LVALQRARVP ASSLSVVVER IGDRTPAVAW NASRPMQPAS TMKLVTTYAG LSLLGADYRW RTSAYADGDV DENGTLHGTL YIKGTGDPKL VPEELIDLVN KIRRAGIVNV DGALVLDKTF FAPQTRDLPP LDDDASAPYN VGPDPLLYAF KALSFTVTPT DSGAIAVDVV PALANLNVDN RLVEGQGSCD AARPTLVTDA NGELTASFAG DYPPSCGPTT TNLAVLNHST FFARGFLALW RQTGGSFSGT IAEGKVPGRA RPVASHHGPV LSSVVHDINK FSNNVMARNL FLTIGAVEHR PPATPAQSAD TIRAFLAHSG LPTDGLALEN GSGLSRDERV SALGLADMLQ AANASPVAQA FVDSLPIAGV DGTMRNRLTN APVGGNAHIK TGTLRDVRAI AGYVASADGS SYVVVSFIND DRASAARAAH DALLEWVYEG PR
|
| |