| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A3112 |
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| Symbol | ligD |
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| ID | 4887264 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 668 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009075 |
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| Strand | - |
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| Start bp | 2950885 |
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| End bp | 2954358 |
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| Gene Length | 3474 bp |
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| Protein Length | 1157 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640133048 |
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| Product | DNA ligase D |
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| Protein accession | YP_001064103 |
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| Protein GI | 126444550 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0919454 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGGAA AACTCAGCGT GTACCGCAGC AGGCGGCGCT TCGGCGAAAC GCCGGAGCCC
GAGGGCGCGC GGCGGTCGCC GCGCCGCACG AAAGGCGCGG GCCGCGCGGG CGACGAATCG
AAGCGGCGCG CGCGCGGCGA GCGCGTCGCT CGCCGTGGCC GCGCGCAGCA GCCGGCGCCG
GCGCGCCGCA GGTCCGCGCT TCATTACGTG ATCCAGGAGC ATCACGCGCG CCGCTTGCAT
TACGACTTTC GTCTCGAACT CGATGGCACG CTCAAATCGT GGGCGATCCC GAAAGGGCCG
AGCCTCGATC CTTCGGTCAA GCGGCTCGCG GTGCACGTCG AGGATCATCC GCTCGAATAC
GCGGCGTTCG AGGGCGAGAT TCCGGAGGGC CATTACGGCG CGGGCTCGGT GATTGTCTGG
GATCGCGGCG CATGGACGCC CGCCGGTGGC ATCGCCGCCG CGCGCGCCGG CTATCGCGCG
GGCAAGCTGA GCTTCACGCT CGACGGGGAC AAGCTGCACG GCGGCTGGGC GCTCGTGCGC
GGCCGCGGGC TGCGTGACAG CGGCGGCAAG CACGAGCAAT GGCTGCTGAT CAAGGAACGC
GACGGCGACG CGCGCGACCA AGCGGACTAC GACGTGCTGC GCGCACGGCC GGGCAGCGTG
CTCGGCGGCG CGCGGTCCGG GCGGGCGAGG CGCGGGCGCG CGGCCGAGCC GACGGAGCGC
GACGCCGCCG CGCCGAAGCG GGCGCGCGCT TCAGTGCCGA AAGGGCGCGC CGAAGCGAAG
ACGAGCGGGC GTGCGCCGCG CACCGTGTCG AACGGGACTG CGGGCGCGGG TAAGGGCGCA
AGCAAGCGTG CAAGCAAGCG CGAGGGCACG AATACCGGAA ACGGCGCGAG AAGCGGCAAG
GGCAGCGGCA AGGGCAGCGG CAAGGGCGCG GGCAAGGGCG GGGCCACACC GCGCCGCAAA
CGCGCCGCCG CGCCGCAGTC GTTCGACGTC GATTCGGCCG ATACCGATTC ACCCGCGGCG
CGCGGCCTCG CGTTGCCCGC CGGGCTTGCC GCGCGCTTCG GCCTGAGCGG CGCGAAGCGC
GCGGCGCTGC CGCGCACGTT GCGGCCGCAA CTGGCGACGC TCGTCGATGC GCCGCCGCCC
GGCAAAGACT GGCTATACGA AGCGAAGTTC GACGGCTACC GCGTGCTGAT CCGGATCGAT
CGCGCCGCGG CGTCCCGCCC GATTGCCGTC CACACGCGCG AGGGGCTCGA CTGGAGCGCG
AAATTCGCCG CGCAGCTCGA CGCGCTCGCG CGCCTGCCGG TCGACCGGGG CTGGCTCGAC
GGCGAGGCGG TCGTGCTCGA TCGCGCGGGC GTGCCGGATT TCCAGGCGCT GCAGAACGCG
CTCGGCGCCG GACGCTCGAA CGATGTCACG CTGTTCCTGT TCGACGTGCC GTTCCTGAAC
GGCTTCGACC TGCGCGGCGT GCCGCTCGAA CGGCGGCGCG CGCTGCTCGC CGCGCTCGTC
GCCGCGCATG CGAGCGACGT GCTGCGCTAC TCGGAGAGCC TCGCGTTCGA GGCCGCCGAT
CTGCTGACGG GCGCGTGCGA CGCGGGGCTC GAAGGGCTGA TCGGCAAGCG GCGCGATGGC
CGGTACGTCG AGGGGCGCTC GAGATCGTGG ATCAAGCTGA AGTGCCGGCG CAGGCAGGAG
TTCGTGATTG GCGGCTACAC GGAGCCGGCC GGACGGCGCA GCGGATTCGG CGCGTTGCTG
CTCGGCGTGT ACGCCCGGGC GCCGGGCGAC GAGGGCGACG AGGGCGAACG AAGGACGCGC
GGCGCGGCCG AAACGCGCGA CGAGCGGCGT CGTGCATCCC ACGCATCCCA CGCATCCCGC
ACATCCCGCA CATCCCGCGC GCCCGATGCC GGCGCGGCGC GCGCACCGCA GGCGCGGCCG
CTCGCGTTGC GCTACGTCGG CCGCGTCGGC ACCGGCTTCG GCGAGCGCAC GCTTCGCGCG
CTCGCGCGGA CGCTGCGCGA GCACGAGACC GGTCGGATGC CGTTCGCGGA CGTGCCGCGC
GAGCGCAGCG GCACGCCGGT TCACTGGGTG AAGCCCGTGC TCGTCGCCGA ATGCGAATTC
GCGGAATGGA CGGGCGACGG CATCGTCCGG CAGGCGTCGT TCGTCGGGCT GCGCGAAGAC
AAGCCGGCGC GCACGATCGT TCGCGAGCAA CCGCAATCCA TGGAGACGGA AGCCATGAAT
GAACACGCTG ACGAACATAC GGATGAACAT ACCGATGCAC GCGCCGAACG TCGCACCGGC
GGACGCACGC GGCGCAAAGC ACGTGACGGC GGCGCGCGCG ACGCGCCGCC GCTTGCCCGC
CATCCGAAGC GCGGCGTTGC GGGATCGTCC ACGCGCAAGG GCGCGCGGGA CGGGGAGGCG
GGCAAGCGCG CCGCCGCGGG ATCGTCGCCT TCGTCTTCAC CGTCGAGTTC GACTTCGCCT
TCGATTTCGG CGTCAGGGCG CACGCGCGGG GGCGGTCGTT CCGCCTCGCG CGATCGAGCC
GGCGATGCGG ACGAAGGTGC GAACGAAGGC GCGAACGATC ACGCGCCGCG CGAGCGCGCC
GGCGCGCCGA AGGTGGCGGG CGTGCGCGTC TCGCATCCCG GCCGCGTGAT CGATCCGCAC
ACGGGCACGC GCAAGCTCGA CCTCGTCGAA TACTGGGAAT GGATCGCGCC GTGGTTGCTG
CCGCATCTGA AGGGCCGGCC GGTGTCGCTC GTGCGCGCGC CCGCCGACAT CGGCGGCGAG
CTGTTCTTCC AGAAGCACGC GGACAAGCTG GAGATTCCGA ACGTCGCGCT GCACGCGGGG
CTCGACCCGG GCCATGAGGC GCTCATCACG ATCGACGATG TGAAGGGGCT CGTCGGCGCC
GCGCAAATGG GCACGATCGA GCTGCACACA TGGAACGCGC ACGTGTCGAA CATCGAGAAG
CCGGACCGCG CGGTGTTCGA CCTCGACCCG GACCCGTCGC TCGACTGGCG CGCGGTGATC
GAGGCTGCGC AGCTCACGCG CGCGCTGCTG GACGAGCTCG GCCTCGTGTC GTTCTGCAAG
ACGAGCGGCG GCAAGGGGCT GCACGTCGTC GTGCCGCTCG CGCGCCATGC GGGCTGGGAC
GACGTGAAGG CGTTCGCGCA CGCGGTGGCG CGGCACATGG CGGCGACCCT GCCCGAGCGC
TTCACCGCGA CGATGGGGCC GCGCAACCGG AAGGGCAAGA TCTTCGTCGA CTATCTGCGC
AACAACCGCG GCGCGAGCAC GATCGCCGCG TACTCGGTGC GCGCGAGGCC GGGGCTTGGC
GTATCGGTGC CGATCGCATG GGACGAACTG CCGGATACGA CGGGCGCCGC GCAATGGACG
CTCGCGAACC TGCACGAGCG TCTCGACGCG CTGAAGCACG ACCCGTGGCG CGCCTATGCG
CATGTGCGGC AACGCGTGAC GGCGGCGTTG CGGAAGCGGC TGAGCGATGG GTAG
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| Protein sequence | MAGKLSVYRS RRRFGETPEP EGARRSPRRT KGAGRAGDES KRRARGERVA RRGRAQQPAP
ARRRSALHYV IQEHHARRLH YDFRLELDGT LKSWAIPKGP SLDPSVKRLA VHVEDHPLEY
AAFEGEIPEG HYGAGSVIVW DRGAWTPAGG IAAARAGYRA GKLSFTLDGD KLHGGWALVR
GRGLRDSGGK HEQWLLIKER DGDARDQADY DVLRARPGSV LGGARSGRAR RGRAAEPTER
DAAAPKRARA SVPKGRAEAK TSGRAPRTVS NGTAGAGKGA SKRASKREGT NTGNGARSGK
GSGKGSGKGA GKGGATPRRK RAAAPQSFDV DSADTDSPAA RGLALPAGLA ARFGLSGAKR
AALPRTLRPQ LATLVDAPPP GKDWLYEAKF DGYRVLIRID RAAASRPIAV HTREGLDWSA
KFAAQLDALA RLPVDRGWLD GEAVVLDRAG VPDFQALQNA LGAGRSNDVT LFLFDVPFLN
GFDLRGVPLE RRRALLAALV AAHASDVLRY SESLAFEAAD LLTGACDAGL EGLIGKRRDG
RYVEGRSRSW IKLKCRRRQE FVIGGYTEPA GRRSGFGALL LGVYARAPGD EGDEGERRTR
GAAETRDERR RASHASHASR TSRTSRAPDA GAARAPQARP LALRYVGRVG TGFGERTLRA
LARTLREHET GRMPFADVPR ERSGTPVHWV KPVLVAECEF AEWTGDGIVR QASFVGLRED
KPARTIVREQ PQSMETEAMN EHADEHTDEH TDARAERRTG GRTRRKARDG GARDAPPLAR
HPKRGVAGSS TRKGARDGEA GKRAAAGSSP SSSPSSSTSP SISASGRTRG GGRSASRDRA
GDADEGANEG ANDHAPRERA GAPKVAGVRV SHPGRVIDPH TGTRKLDLVE YWEWIAPWLL
PHLKGRPVSL VRAPADIGGE LFFQKHADKL EIPNVALHAG LDPGHEALIT IDDVKGLVGA
AQMGTIELHT WNAHVSNIEK PDRAVFDLDP DPSLDWRAVI EAAQLTRALL DELGLVSFCK
TSGGKGLHVV VPLARHAGWD DVKAFAHAVA RHMAATLPER FTATMGPRNR KGKIFVDYLR
NNRGASTIAA YSVRARPGLG VSVPIAWDEL PDTTGAAQWT LANLHERLDA LKHDPWRAYA
HVRQRVTAAL RKRLSDG
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