Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS668_A2249 |
Symbol | |
ID | 4886640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 668 |
Kingdom | Bacteria |
Replicon accession | NC_009075 |
Strand | - |
Start bp | 2179415 |
End bp | 2181220 |
Gene Length | 1806 bp |
Protein Length | 601 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640132186 |
Product | YscC/HrcC family type III secretion outer membrane protein |
Protein accession | YP_001063243 |
Protein GI | 126445193 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGGCCA AGATTCCCGT TTTGCTGTCC CTGCTGTGCT CGCTCGCGAG CCTTTCCGTC GACGCCGCGC CGATCCGCTG GCGCAGCGCC GACATCCAGT ACGCGGCCGA GGGCAAGGAC GTGAAGGACG TGCTGCGCGA TCTCGCCGCG AGCCAGAACA TCGCGGCGAA CGTCGCGCCC GGCGTGAGCG GCGCGGTGAG CGGCAAGATG AAGATGTCGC CGCAGCGCTT TCTCGACACG CTCGCCGCGT CGTTCGGCTT TGTCTGGTAT TACGACGGCA CCGTGCTGTA CGTGACGCCC GCGAGCGACA TGAAGAGCAC GCTCGTCAAG CTCGATCACG CGAACACGGG CGACCTGCGC GACCTGCTCG AGCAGATGAA GGTCGCCGAT TCGCGCTATC CGATCACCTA CAACGCGCAG CAGCGCACCG CGCTCGTCGC GGGGCCGGCG CGCTACGTCG AGCTCGTGAC GAGCGTCGCC GCGCGGCTCG ACGAGAATTC CGCGCGCACG GGCGGCACGC AGATCCGCGT GTTCTCGCTG AAGCACGCAT GGGCCGCGGA TCGCGACGTG AACGTCGACG GCACGGCGGT ATCGATGCCG GGCGTGGCTT CGCTGCTGAA CCGGATGTAT CACCCGGGCG AAGGCAAGCG CGCATCGCAG ACGACGCTCG GCAAGCCGAT CAGCCGCGCC GCGCCGATGA CGGATCTCGG CGGCGGGCGC AGCGGCGTGC CGCCGCCGCC GCTGCCGCCG TACATGCAGG CCGCGCAGTC GGGCGACGGC GCGGCCATGC CGGCGGGCGT GCCCGGCGTG CCCGGCGGCG ATCCGCGCCC GAGCGGCATG GTCGCCGCCG CGATCGCGAA TCCGGGCGCG GCGCGCGCGC CGGGCGGCGG GATGCCCGAT GCGAACGGCG TGCCCGCCGG CGCGGGCGAC GCGGCGGATC TGCCGGTGAT CCAGGCCGAT CCGCGCACGA ACTCGATCCT CGTGCGCGAC GTGCCCGAGC ACATGGCGCA GTATCCGGAC CTGATCGCGC TCCTCGACGT GAAGCCGCGC CTGATCGAGA TCGAGGCGCG CATCATCGAG ATCGACGAAG GCGCGCTCAA GCAGCTCGGC GTCGACTGGC GCGCGCACAA CAGCCATTTC GACCTGCAGA CGGGCACGGG GCTCACGTCG CAGAACGGCT ATGCGAACGG CACGCTGAAC CCCACGTTCG GCTCGATCAC GCTCTCCGGC AACGATTCGG TCGGCGTGCC GGCGAGCCCG CTCGGGCTGT CGCTGACGGC CGTGCTCGGC GACGCCGGCC GCTATCTGCT CGCGCGGATC AACGCGCTCG AATCGTCGAA CCAGGCGCGC ACCGACGCGA GCCCGAAGGT CACGACGCTC GACAACGTCG AGGCGGTGAT GGACAACAAG AAGCAGTTCT TCGTGCGCGT GGCGGGCTAC ACGTCGGCCG ACCTGTACAG CATCTCGACG GGCGTGTCGC TGCGCGTGCT GCCGATGGTC GTCGACGAAG GCGGGCGCAC GCAGATCAAG CTCGACGTGC GGATCGTCGA CGGCGAGCTG TCGCAGCAGA CGGTCGACAA CATTCCGGTG ATCGTGTCGA ACGAGATCAA CACGCAGGCG TTCATCGAGC AGGGGCAGGC GTTGCTGATC GCGGGCTACA AGGTGGATGC GCGCTCGAGC ACGCAATCGG GGGTGCCGGT GCTGTCGAAG CTGCCGCTCG TCGGCGCGCT GTTTCGTTCG ACCGACAAGC AGAACAGCCA CAGCGAGCGG CTCTTTCTCG TGACGCCGAG AGTGATCGAG CCTTGA
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Protein sequence | MKAKIPVLLS LLCSLASLSV DAAPIRWRSA DIQYAAEGKD VKDVLRDLAA SQNIAANVAP GVSGAVSGKM KMSPQRFLDT LAASFGFVWY YDGTVLYVTP ASDMKSTLVK LDHANTGDLR DLLEQMKVAD SRYPITYNAQ QRTALVAGPA RYVELVTSVA ARLDENSART GGTQIRVFSL KHAWAADRDV NVDGTAVSMP GVASLLNRMY HPGEGKRASQ TTLGKPISRA APMTDLGGGR SGVPPPPLPP YMQAAQSGDG AAMPAGVPGV PGGDPRPSGM VAAAIANPGA ARAPGGGMPD ANGVPAGAGD AADLPVIQAD PRTNSILVRD VPEHMAQYPD LIALLDVKPR LIEIEARIIE IDEGALKQLG VDWRAHNSHF DLQTGTGLTS QNGYANGTLN PTFGSITLSG NDSVGVPASP LGLSLTAVLG DAGRYLLARI NALESSNQAR TDASPKVTTL DNVEAVMDNK KQFFVRVAGY TSADLYSIST GVSLRVLPMV VDEGGRTQIK LDVRIVDGEL SQQTVDNIPV IVSNEINTQA FIEQGQALLI AGYKVDARSS TQSGVPVLSK LPLVGALFRS TDKQNSHSER LFLVTPRVIE P
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