| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A2173 |
|---|
| Symbol | |
|---|
| ID | 4885853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | - |
|---|
| Start bp | 2109170 |
|---|
| End bp | 2111242 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640132110 |
|---|
| Product | HrcV family type III secretion protein |
|---|
| Protein accession | YP_001063167 |
|---|
| Protein GI | 126444659 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.324118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAAGA ATCTCCTGAT CAAGGCCCAA GCGCGCCCCG AACTGATCGT CCTGTGCCTG
ATGGTGCTCG TGATCGCGAT GCTGATCGTG CCGCTGCCGC CGTACGTGCT CGATTTCCTG
ATCGGCCTGA ACATCGTGAC GGCGCTGCTC GTGTTCATGG GCTCGTTCTA CATCGTCAAC
ATCCTCGAGT TCTCGACGTT TCCGCCGATC CTGCTGATCA CGACGCTGTT CCGGCTCGCG
CTGTCGATCA GCACGAGCCG GATGATCCTG CTCACCGCCG AGGGCGGCAA GATCATCACG
ACGTTCGGGC AGTTCGTGAT CGGCGATAAC CTCGTGGTCG GCTTCGTCGT GTTCGTGATC
GTGACGATCG TGCAGTTCAT CGTGATCACG AAGGGCTCGG AGCGCGTCGC CGAAGTCGCG
GCGCGCTTCT CGCTCGACGC GATGCCCGGC AAGCAGATGA GCATCGACGC GGACCTGCGC
GCCGGCATCA TCGACAACGA AGGCGTGAAG GCGCGCCGCT CGGCGCTCGA GCGTGAAAGC
CAGCTGTACG GCTCGTTCGA CGGCGCGATG AAGTTCATCA AGGGCGATGC GATCGCCGGC
ATCGTCGTCA TCTTCGTGAA CCTGATCGGC GGCATCTCGG TCGGCGTGAT GCAGCACGGC
ATGTCGGTGT CCGACGCGCT CACGACCTAC ACGATCCTGT CGATCGGCGA CGGCCTCGTC
GCGCAGATCC CGGCGCTCCT GATCGCGATC GGCGCGGGCT TCGTCGTCAC CCGCGTGGGC
GGCTCGGGCA ACAACCTCGG CGCGAACATC GTCGGCGAGC TGTTCTCGAA CCCGTTCGTG
CTCGTCGTCA CGGCCGTGCT CGCGCTCGCG ATCGGCCTGC TGCCCGGCTT TCCGCTGATC
GTCTTCCTGC TGATCGCGCT CGCGCTCGGC GCGCTGTACG TGCGCCGCGA ATGGCGCAAG
CCGGGCGAGC CGGCGCGCGA GGGCGGGCTC GTCGGCAAGG TCGCGGGCGC GCTCTCGGGC
GGCGGCGCGG CGAAAGCGGC CGACGGCGGC GCCGGCGATG TCGACATCGA CAAGCTGATT
CCGGAGACGG TGCCGCTGAT GCTGATGGTG CCCGAGGCGG CGCAGCCGAT GTTCGAGCAG
GAAGGCGTGA TCGGCGCGTT CCGGCGGCGC GCGTTCGTCG ACATGGGGCT GCGCCTGCCC
GATATCCGCG TCGTGTATTC GCCGCAGGTG CATCCGCGCG AGGCGATCGT GCTGATCAAC
GAGATCCGCG CGGCGACGTT CGCGATCTGC TTCGACCGGC ACCGCGTGGT CGGCTCGACG
CTCGCGCTCG AAGGGCTGCC CGTCGATGTC GTGACGCTGC CGGACGGCGC GGGCGGCGAC
GCGTGGTGGG TGCCGGGCGC GCAGACCGAC GCGCTCGCGA AGATCGACGT GCTCACGCGC
TCGGCGATCG ACGATCTGTA CGGGCAGTTT CTCGCGGTGA TGCTCGCCAA CGTATCGGAA
TTCTTCGGCG TGCAGGAGGC CAAGCGCCTG CTCGACGACA TGGACCAGAA GTACCCGGAG
CTCATCAAGG AGAGCTATCG GCACATTTCG GTGCAGCGCA TCGCGGAGGT GTTCCAGCGC
CTGCTCGCCG AGAAGATCTC GATTCGCAAC ATGAAGCTGA TTCTCGAATC GCTCGCGCAA
TGGGGGCCGA AGGAGAAGGA TTCGATCCTG CTCGTCGAGC ACGTGCGCGC GGCGCTCGCG
CGCTACATCT CGAACCGCTT CGCCGCGGGC GGCAAGCTGC GCGCGCTCGT GCTGTCGGCG
CAGTTCGAGG ACGCGGTGGG CAAGGGCGTG CGGCAGACCT CGGGCGGCGC GTATCTGAAC
CTGGAGCCCG CGACGAGCGA GCAACTGCTC GACCGGCTCG CGCTCGAGCT CGCGCGCGCG
GGCTTCTCGC AGCGCGACAT GGTGCTGCTT GCCTCGATGG AAGTCAGGCG TTTCGTCAAG
CGGCTGATCG AGAGCCGCTT TCCGGAACTG GAGGTGCTGT CGTTCGGCGA AGTGGCCGAC
AGCGTCGCAA TCGATGTGTT GAAGACGATC TAA
|
|---|
| Protein sequence | MLKNLLIKAQ ARPELIVLCL MVLVIAMLIV PLPPYVLDFL IGLNIVTALL VFMGSFYIVN
ILEFSTFPPI LLITTLFRLA LSISTSRMIL LTAEGGKIIT TFGQFVIGDN LVVGFVVFVI
VTIVQFIVIT KGSERVAEVA ARFSLDAMPG KQMSIDADLR AGIIDNEGVK ARRSALERES
QLYGSFDGAM KFIKGDAIAG IVVIFVNLIG GISVGVMQHG MSVSDALTTY TILSIGDGLV
AQIPALLIAI GAGFVVTRVG GSGNNLGANI VGELFSNPFV LVVTAVLALA IGLLPGFPLI
VFLLIALALG ALYVRREWRK PGEPAREGGL VGKVAGALSG GGAAKAADGG AGDVDIDKLI
PETVPLMLMV PEAAQPMFEQ EGVIGAFRRR AFVDMGLRLP DIRVVYSPQV HPREAIVLIN
EIRAATFAIC FDRHRVVGST LALEGLPVDV VTLPDGAGGD AWWVPGAQTD ALAKIDVLTR
SAIDDLYGQF LAVMLANVSE FFGVQEAKRL LDDMDQKYPE LIKESYRHIS VQRIAEVFQR
LLAEKISIRN MKLILESLAQ WGPKEKDSIL LVEHVRAALA RYISNRFAAG GKLRALVLSA
QFEDAVGKGV RQTSGGAYLN LEPATSEQLL DRLALELARA GFSQRDMVLL ASMEVRRFVK
RLIESRFPEL EVLSFGEVAD SVAIDVLKTI
|
|---|
| |