| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A1996 |
|---|
| Symbol | |
|---|
| ID | 4886527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | + |
|---|
| Start bp | 1932464 |
|---|
| End bp | 1933522 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640131934 |
|---|
| Product | type III secretion system protein HrcU |
|---|
| Protein accession | YP_001062991 |
|---|
| Protein GI | 126442638 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
|---|
| TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.920837 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACG AAAAGACCGA GGAACCCACC GACAAGAAGC TGCGTGACGC GCGTCGAGAC
GGTGAGGTAT CCCGTAGCAC GGATCTCTCC GACGCCGTAT CCATGTCCGC TGCGATTCTG
TTGCTGGTTG CGGCCGCCGA TCATTTCGGC GATGCAATGC GAGCGTTGGT CAACGGCGCG
CTAGCGTTCG TTTCCGCCGA TCATTCTCTC GTCGAGATGA CCGCGCGGCT GTACCAGTTC
GGCGGCATCG CGCTATCGGC GGTCATGCCG CTGCTGTTCG TCGCGGCGCT CGCGGGTATC
GGCGGATCGG TCCTCCAGGT CGGGCTGCAG ATATCGCTGA AACCGGTCAT GCCGAATCTC
GGCGCACTCA ATCCGGCTGA AGGTCTGAAG AAGCTTTTTT CGCCGCGTAG CGCGATCGAG
TCCATCAAGA TGATCGTCAA GGCCGTCATC GTGTTCTGCG TGGCGTGGAA AACGATCGTA
TGGCTGTTCC CGCTCATCGC CGGCGCGCTG TATCAATCGC CGCCCGAACT GTCACGCATA
TTCCGGGAGA TCCTGGCGAA GTGGCTGATG GTGGTGGCCG GTCTATGCCT TCTGATGGGG
GCGGCCGACG TGAAACTCCA GCGCTTCATG TTCATGCAGA AGATGAAGAT GACGAAGGAC
GAGGTGAAGC GCGAATCCAA AAACGACGAA GGCGATCCGC TGCTCAAGGG CGAGCGCAAG
CGGCTTGCGC GCGAACTGGC GGCCGCGCCG CCACAGCATC AGGTCGCGCA CGCGAATTTC
GTCGTCGTCA ACCCCACCCA CTACGCGGTC GCGGTTCGTT ACGCGCCCGA CGAGCATCCG
CTCCCCCGCG TGGTCGCGAA GGGCCTCGAC GAAGCGGCCA TCGCACTGCG GCGGGCCGCG
CAAGACGCGA ACATCCCGAT CATCGGCAAT CCCCCTGTCG CGCGCGCGTT GTTCCGAATT
GGCGTCGAGG AGCCGGTGCC CGAAGAACTG TTCGAGATCG TTGCCGCGAT CCTGCGCTGG
ATCGACGCGA TCGGCCCGCG CCGAAACGAA CGGGCCTGA
|
|---|
| Protein sequence | MSDEKTEEPT DKKLRDARRD GEVSRSTDLS DAVSMSAAIL LLVAAADHFG DAMRALVNGA
LAFVSADHSL VEMTARLYQF GGIALSAVMP LLFVAALAGI GGSVLQVGLQ ISLKPVMPNL
GALNPAEGLK KLFSPRSAIE SIKMIVKAVI VFCVAWKTIV WLFPLIAGAL YQSPPELSRI
FREILAKWLM VVAGLCLLMG AADVKLQRFM FMQKMKMTKD EVKRESKNDE GDPLLKGERK
RLARELAAAP PQHQVAHANF VVVNPTHYAV AVRYAPDEHP LPRVVAKGLD EAAIALRRAA
QDANIPIIGN PPVARALFRI GVEEPVPEEL FEIVAAILRW IDAIGPRRNE RA
|
|---|
| |