| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A1985 |
|---|
| Symbol | |
|---|
| ID | 4885989 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | - |
|---|
| Start bp | 1922564 |
|---|
| End bp | 1924330 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640131923 |
|---|
| Product | YscC/HrcC family type III secretion outer membrane protein |
|---|
| Protein accession | YP_001062980 |
|---|
| Protein GI | 126445154 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02516] type III secretion outer membrane pore, YscC/HrcC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGA AAGCGCTGTT ATGCGCGGCA TGGTGCGTCG CGATATTTGG CACCATCGGG
ATCGGCGCCG CGAACGCGAT GCCCGTACGC TGGAGGAGCA CGGTCGTGCA TGTCGTGCTG
GAAGGCAAGG ATCTAAAGGA CGTACTGAGG GATTTTGCCG CGAGTCAAGG CGTCGCGACA
TCGATTGCCG GCAATGTTCA AGGTACCGTC ACGGGCCGAT TCGATCTGTC GCCCCAGCGC
TTTCTCGATA CGCTCGCCGC GACTTTCGGA TTCGTGTGGT TCTACGATGG CAATATCTTG
TCCATCACAA ATGCAAACGA TATGACGCGG CAAGTCTTGC CGCTCGATCA CGCTTCGATC
GGCGAATTGC GTTCCGCGTT GCGCCAGATC GGCATGGACG ACAAGCGCTT TCCGATCTTC
TACGACGAGG TGTCCGGCAC CGTGCTCGTC AGCGGTCCCG CCCAGTATGT CCAGATCGTA
ACCGATATCG CGCAGCGGCT CGACACGCTG TCGGGCCGCC GAAACGGCTC GACAATCCGC
ATCTTCAAGT TGAAGCACGC GTGGGCGGCC GATCGCAACG TGCAGATCGA CGGAAACACG
GTGACCATGC CCGGGATCGC GACCGTGCTG GCGAACCTGT ACCGCGTGCG AGGAAGGGCG
GGAACCGGTC AGTCGAGTGC GGCACCCGGC GTGCAGCGGG TGCAGCCGAT GGGCGACGTT
TCCGGCAGTG CGTATGGCGG GAACCGGCTG ATGCCTCCAT TGCCGCCGAG CATGATGGGG
GGAGGCCGCG GCGACGCATT CGCCAAGGGG GCGTCGATCG ACGGCGAAAG CGGGGGAGCC
GCGAGCGCCG CGCCTGGCGG AGCGCTCCGG ACGGAGGAGG TGTCCGCGGA GCGCGACGAG
TTGCCGATCA TCCAGCCCGA TCCGATGACG AACTCGGTGT TGATCCGCGA TTTGCCCGAT
CGCCTTGCAC AGTATGCGCC GCTCATCCAG CAACTCGACA TACGGCCCAG GCTTATCGAA
ATCCAGGCGC ACATCATGGA GATCGACGAC GACTTGCTTC GGGAGATCGG CGTCGACTGG
CGCGCGCATA ACAGCCACGG CGATATTCAG ACAGGCACGG GCAATACGGC GCAAAACGAT
TATTCGGGCG GCCAGATCAA TCCGTTCTTC GGTACGACGA CGCTTGCGGG CAACGCAGTT
GTCAACGCGG CGCCCGCCGG CGTGTCGGTC ACGGCGGTCG TCGGGGACGC GGCTCGATAT
TTGATGGCGC GGGTGAGCGC GCTGCAGTCG ACCTCGAAGG TGAAGATCGA TGCATCGCCA
CTTGTCGCGA CGCTCGACAA TTCGGAGGCC GTAATGGATA ACACGACGCG CTTTTTCGTC
AAGGTATCGG GTTACGCGTC GGCGGAACTC TACAGCGTGT CGACGGGTGT TTCGCTGCGC
GTTCTGCCGA TGATCGTGCA AGACGGTAGC GAGACCCGGA TCAAGATGAA TGTTCACGTG
ACGGACGGGC AACTGACAGG CGACCAGGTC GATAACCTGC CGGTCATCAC GAGCAGCGAA
ATCAATACGC AAGCGTTCGT CGGTCAGGGG CAGAGCCTGC TGATCGCCGG CTACAGTACG
GACAAGCGCG CGAACGGTGT GGCGGGCGTG CCTTGGCTGT CGAAGATCCC ATTGCTCGGT
GCGCTGTTTC GATACCACAG CGATTCGCAG AACCACATGG AGCGCGTATT CCTGTTGTCG
CCGCGAATTA TCGACCCGGG CACGTGA
|
|---|
| Protein sequence | MKAKALLCAA WCVAIFGTIG IGAANAMPVR WRSTVVHVVL EGKDLKDVLR DFAASQGVAT
SIAGNVQGTV TGRFDLSPQR FLDTLAATFG FVWFYDGNIL SITNANDMTR QVLPLDHASI
GELRSALRQI GMDDKRFPIF YDEVSGTVLV SGPAQYVQIV TDIAQRLDTL SGRRNGSTIR
IFKLKHAWAA DRNVQIDGNT VTMPGIATVL ANLYRVRGRA GTGQSSAAPG VQRVQPMGDV
SGSAYGGNRL MPPLPPSMMG GGRGDAFAKG ASIDGESGGA ASAAPGGALR TEEVSAERDE
LPIIQPDPMT NSVLIRDLPD RLAQYAPLIQ QLDIRPRLIE IQAHIMEIDD DLLREIGVDW
RAHNSHGDIQ TGTGNTAQND YSGGQINPFF GTTTLAGNAV VNAAPAGVSV TAVVGDAARY
LMARVSALQS TSKVKIDASP LVATLDNSEA VMDNTTRFFV KVSGYASAEL YSVSTGVSLR
VLPMIVQDGS ETRIKMNVHV TDGQLTGDQV DNLPVITSSE INTQAFVGQG QSLLIAGYST
DKRANGVAGV PWLSKIPLLG ALFRYHSDSQ NHMERVFLLS PRIIDPGT
|
|---|
| |