| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A1588 |
|---|
| Symbol | ribD |
|---|
| ID | 4887880 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | + |
|---|
| Start bp | 1522412 |
|---|
| End bp | 1523617 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 77% |
|---|
| IMG OID | 640131527 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001062584 |
|---|
| Protein GI | 126442868 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase |
|---|
| TIGRFAM ID | [TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.739669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGT TCTCCGACAT CGACCGCACG CACATGGCCC ATGCGCTGCG GCTCGCCGAA
CAGGGGCTTT ACACGACGCA TCCGAACCCG CGCGTGGGCT GCGTGATCGC GCGCGGTGCC
CGCACGCTCG GCGCGGGCTG GCACCGCCGC GCGGGCGAAC CGCACGCGGA AGTGCACGCG
CTGCGCGAAG CGGGCGAGCG CGCACGCGGC GCGACCGCGT ACGTGACGCT CGAGCCCTGC
GCGCACTTCG GCAGGACGCC GCCGTGCGCG AACGCGCTCG TCGCGGCGGG CGTCGCGCGC
GTCGTGATCG CCGCGCGCGA TCCGTTCGAG CAGGTCGCCG GGCGCGGCGC GGCGCGCCTG
GCCGACGCGG GCATCGTCGT CGAGCAGGGG CTGCTGGCGG CGCAGGCGCG CGAGCTGAAC
ATCGGCTTCT TCAGCCGGAT CGAGCGCGGC CGGCCGTGGA CGCGCGCGAC GCTGGGCTTG
CCGATCGACG CCCCGCCGGC GCTCGATTCG GCCGAGCTGG CGGCGCTTGA CGCGGCGCTG
TCCGAGGCGC GCGACGATCT CCGGCACTGG CGCGCGCGCA GCTCGGTCGT GCTCGAACGC
GCGCCCGACG CCGGGCGCGC CGTCGGGTGC AACGCAGCCG CGCCCCGCTA CGTCGTGAGC
GCGCGGGACT GCGCGGCGCT CGGCGCGGCG AGCGCCGCGT GCGCGCCCGC CGACGGCGTG
CCGACGCTCG CGCTGCATCG CGACGACAAC AGCGCAAGCG CATGCGAAGA CGCGCACGGC
ATCGGCCATC GCGCCCGTCG CGTCGATCGC GTCGATCGCG TCGATCGCGT CGATCACGCG
GATGCGCGGC CCGCCGGCGC ACCGTCGGCT TCGGCTTCCG ACACCGACGC CGGCCTGCCC
CTGCCCGACG CGTTCGCGCG GCTCGCGCGG CAAGGCGTCA ACGAGCTGCT CGTCGACGCC
GATCTTGCGT TGTGCGACGC GCTGTTCGGC AGCGATCTCG CCGACGAGCT GCTGCTGTAC
GCGCACCCGG CGCGCCGCGA CGCGCCCGTA TCGGCGTCGC GGCTCGCCGC GGCGATCGAC
GACGTCGCGC GCCGCTGGGG CCTGCGGCCG CTCGAGCGTC TCGCGATCGG CCGCGGCGAG
CGGATCCTGC TGCGCCGCGC GCGCGGGCCC GAGCCCCGGC AAGGCGAGCC GGGCGTCATC
CCCTAG
|
|---|
| Protein sequence | MSAFSDIDRT HMAHALRLAE QGLYTTHPNP RVGCVIARGA RTLGAGWHRR AGEPHAEVHA
LREAGERARG ATAYVTLEPC AHFGRTPPCA NALVAAGVAR VVIAARDPFE QVAGRGAARL
ADAGIVVEQG LLAAQARELN IGFFSRIERG RPWTRATLGL PIDAPPALDS AELAALDAAL
SEARDDLRHW RARSSVVLER APDAGRAVGC NAAAPRYVVS ARDCAALGAA SAACAPADGV
PTLALHRDDN SASACEDAHG IGHRARRVDR VDRVDRVDHA DARPAGAPSA SASDTDAGLP
LPDAFARLAR QGVNELLVDA DLALCDALFG SDLADELLLY AHPARRDAPV SASRLAAAID
DVARRWGLRP LERLAIGRGE RILLRRARGP EPRQGEPGVI P
|
|---|
| |