| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A1287 |
|---|
| Symbol | |
|---|
| ID | 4886875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009075 |
|---|
| Strand | + |
|---|
| Start bp | 1216926 |
|---|
| End bp | 1218050 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640131226 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001062284 |
|---|
| Protein GI | 126444768 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.236633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGA CTCTGATTGT TGCAGCAGTT GCTGCATCGT TCGCAACCGT CGCGCACGCG
CAAAGCAGCG TCACGCTGTA CGGTGTGCTC GACGCGGGCA TCACGTACCA AAGCAACGTC
GCGACGCCGT CGGGCTCGGG CAAGTCGCTG TGGTCGGTCG GCGCCGGCGT CGACCAAAGC
CGTTTCGGTC TGCGCGGCTC GGAAGACCTG GGTGGCGGCC TGAAGGCGAT CTTCACGTTG
GAAAGCGGCT TCAACATCGG TAACGGCCGC TTCAACAACG GTGGCGGCAT GTTCAACCGT
CAAGCGTTCG TCGGTCTGTC GAGCAACTAC GGCACCGTCA CGCTGGGCCG TCAGTACGAC
GCAACCCAAG ACTACCTGTC GCCGCTGTCG GCAACGGGCA CGTGGGGCGG CACGTACTTC
GCGCACCCGC TCAACAACGA CCGCCTGAAC ACGAACGGCG ACGTCGCGGT GAACAACACG
GTCAAGTTCA CGAGCGCGAA CTACGCCGGC CTGCAATTCG GCGGCACGTA CTCGTTCTCG
AACAACTCGC AATTCGCGAA CAACCGTGCA TACAGCGCGG GCGCTTCGTA CCAGTTCCAA
GGCCTGAAGG TCGGTGCGGC GTACTCGCAA GCTAACAACG CTGGCGCGAA CACCACGGGC
GCAACGGATC CGCTGACGGG CTTCAACATC GGCGGCACGA ACGCAGCAAG CATCCAAGGC
CGTTCGCGCG TGTACGGCGC CGGCGCAAGC TACGCTTACG GCCCGCTGCA AGGCGGCCTG
CTCTGGACGC AATCGCGTCT CGACAACCTG GCAAACGGCG CGCCGACCAT CCGTGCCGAC
AACTACGAAG CAAACGTGAA GTACAACCTG ACGCCGGCTC TGGGTCTGGG TGTTGCTTAC
ACGTACACGA ACGCGAAGGC GAACGGCGAA AGCACTCACT GGAACCAAGT TGGCGTCCAG
GCCGACTACG CGCTGTCGAA GCGCACCGAC GTGTACGCAC AAGCCGTGTA CCAGCGTTCG
TCGAAGAACG CGAATGCGTC GATCTACAAC GGCGACCTCA GCACGCCGTT CAGCACGTCG
ATCAACCAAA CCGCAGCGAC GGTTGGTCTG CGTCACCGCT TCTAA
|
|---|
| Protein sequence | MNKTLIVAAV AASFATVAHA QSSVTLYGVL DAGITYQSNV ATPSGSGKSL WSVGAGVDQS
RFGLRGSEDL GGGLKAIFTL ESGFNIGNGR FNNGGGMFNR QAFVGLSSNY GTVTLGRQYD
ATQDYLSPLS ATGTWGGTYF AHPLNNDRLN TNGDVAVNNT VKFTSANYAG LQFGGTYSFS
NNSQFANNRA YSAGASYQFQ GLKVGAAYSQ ANNAGANTTG ATDPLTGFNI GGTNAASIQG
RSRVYGAGAS YAYGPLQGGL LWTQSRLDNL ANGAPTIRAD NYEANVKYNL TPALGLGVAY
TYTNAKANGE STHWNQVGVQ ADYALSKRTD VYAQAVYQRS SKNANASIYN GDLSTPFSTS
INQTAATVGL RHRF
|
|---|
| |