Gene BURPS668_A0890 details

Gene Information

• Locus tag: BURPS668_A0890
• ID: 4886732
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 668
• Kingdom: Bacteria
• Replicon accession: NC_009075
• Strand: -
• Start bp: 873539
• End bp: 875479
• Gene Length: 1941 bp
• Protein Length: 646 aa
• Translation table: 11
• GC content: 72%
• IMG OID: 640130830
• Product: sigma-54 dependent transcriptional regulator
• Protein accession: YP_001061889
• Protein GI: 126444130
• COG category: [K] Transcription; [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG3284] Transcriptional activator of acetoin/glycerol metabolism

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.245781
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCAAT CTTCCGTGCT GCCCGCCGCG GCGGGCCGCG TCGACCTGCT CGCGCAAGCG 
CACGCCCGCT CGCTGTCGGT CGGCCTGCGC GCGTCCGAGC TGCCCGATTT CTCGCCGCTG 
TCGCGCGCCG CGCTGCGCGA GCTGATCGAC GGCAGCCCAT CGCTGTACAC GCACGCGCGC 
CCGGTGATGG ACACGCTGCA CACGCAGATC GCCGATACGC AAAGCCTCGT GCTGCTGACC 
GACCGCGACG GCGTGATCCT GCACAGCATC GGCGACGCCG ATTTCGTCGA AAAGGCGAAC 
CGGGTCGCGC TCTGCCCCGG CGTGTCATGG GCGGAAGACG CGCGGGGCAC GAATGCGATC 
GGCACCGCGC TGATCGCGGG CCAGGCGCTC GCCGTGCACG GCACCGAGCA TTTCCTGCGC 
GCGAATCACG TGCTCACCTG CTCGTGCGCG CCGATCGTCG ATCCGTTCGG CCGCCTCCTC 
GGCGCGCTCG ACGTGAGCGG CGATCCGCGC GGCTTCAGCC CGCATACGCT CGCGCTCGTG 
AAGATGTCCG CGCAACTGAT CGAAAACCAT CTGTTCGCGA ATCAGTGCGC GGACGCGCTG 
CGCGTGCGCT TTCACGCGCA CGACGAATTC GTCGATTCGC TGTTCGCCGG CCTCGTCGCG 
TTCAGCCCGA GCGGTGCGCT GATCGCGGCC AATCGCAGCG CACAATTCCA GCTCGGCGCG 
AATCTCGATG CACTGCAACA GCGCGGTTGC GACGAACTGT TCGGCCTGTC TTTCGCGAAG 
CTCGCGCAGC ATGCGGCGCG CGAACCGCTC GCGTGCTTCA CGCTGACGCT CGGCACCGGC 
GTGCGCGTGC GCGCGCGCTG CGAATTCGCG CACGCGCAGC GCACGGCCGT TGCGGTGAGC 
GCGCGCGCCG CGCCGACGCG CGCAACCGAT GCGGCGCGCG ACGAGGAGCC CGACGCGATC 
ACGTTCGCGA CGCTCGATAC GGGCGATGCG CGCATGACCG CCGTGCTGCA GCGGGTCGGC 
AAGGTGCGCG GGCGCGACCT GCCGGTGCTC GTGCTCGGCG AAACCGGCAC CGGCAAGGAA 
TGGCTCGCGC GCGCGCTGCA CCACGCGTCG CCGCGCCGCG ACGGCCCGTT CGTCGCGGTC 
AACTGCGCGG CGCTGCCCGA TTCGCTGATC GAAGCGGAAC TATTCGGCTA CGAGGACGGC 
GCGTTCACCG GCGCGCGCAA GCGCGGCAGC CCCGGCAAGA TCGCGCAGGC GGACGGCGGC 
ACGCTGTTTC TCGACGAAAT CGGCGACATG CCGCTCGCAC AGCAGGTCCG GCTGATGCGC 
GTGCTGCAGG AGCGCGCGGT GATGCCGCTC GGCGGCGCGC GCGCGGTGCC GGTGGACGTG 
CGGATCGTCT GCGCGACGCA CCGCGACCTG CGCGCGATGA TCGCCGCCGG CACGTTTCGC 
GAGGATCTGT TCTACCGGAT CAACGGCCTG GCGGTCACGC TGCCGCCGCT TGCCGAGCGC 
TCGGATCTCG AGACGCTCGT CGCCCGCGTG CTCGCGCGGC TCGCGCGCAG CGAGCCGATG 
CCGGCCACCG TGTCGGCGGC GGTGCTCGCC GCGTTCGCGC GCTGCCGGTG GCCGGGCAAT 
CTGCGTCAAA TGACGAACGT GCTGCGCACG GCGGGCATGC TCGCCGAAGG CGAAGCGCGG 
ATCGACGTCG CGCATCTGCC TGACGATTTC TGGCTCGACT GCGACGCGCG CGCGCGCGAT 
GCGACACCGC CGCGCACGTG TGCCGACGCG GCGGCGGGCG CGGCAGCGGC CGGCGCCTCG 
ACGCTGCAGG ATCATCAGGT CGCGCTGATC GACGGCGCGC TCGACCGGCA TCGCGGCAAC 
GTATCGGCGG CCGCGCGCGA GCTCGGGCTC GCGCGCAATA CCGTCTATCG GCATTTGCGT 
AGACGGCGGT CGAGGGAGTG A 

 

Protein sequence

MPQSSVLPAA AGRVDLLAQA HARSLSVGLR ASELPDFSPL SRAALRELID GSPSLYTHAR 
PVMDTLHTQI ADTQSLVLLT DRDGVILHSI GDADFVEKAN RVALCPGVSW AEDARGTNAI 
GTALIAGQAL AVHGTEHFLR ANHVLTCSCA PIVDPFGRLL GALDVSGDPR GFSPHTLALV 
KMSAQLIENH LFANQCADAL RVRFHAHDEF VDSLFAGLVA FSPSGALIAA NRSAQFQLGA 
NLDALQQRGC DELFGLSFAK LAQHAAREPL ACFTLTLGTG VRVRARCEFA HAQRTAVAVS 
ARAAPTRATD AARDEEPDAI TFATLDTGDA RMTAVLQRVG KVRGRDLPVL VLGETGTGKE 
WLARALHHAS PRRDGPFVAV NCAALPDSLI EAELFGYEDG AFTGARKRGS PGKIAQADGG 
TLFLDEIGDM PLAQQVRLMR VLQERAVMPL GGARAVPVDV RIVCATHRDL RAMIAAGTFR 
EDLFYRINGL AVTLPPLAER SDLETLVARV LARLARSEPM PATVSAAVLA AFARCRWPGN 
LRQMTNVLRT AGMLAEGEAR IDVAHLPDDF WLDCDARARD ATPPRTCADA AAGAAAAGAS 
TLQDHQVALI DGALDRHRGN VSAAARELGL ARNTVYRHLR RRRSRE