| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A0163 |
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| Symbol | |
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| ID | 4888199 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 668 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009075 |
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| Strand | + |
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| Start bp | 143660 |
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| End bp | 147568 |
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| Gene Length | 3909 bp |
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| Protein Length | 1302 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640130104 |
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| Product | ImcF/SciS family protein |
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| Protein accession | YP_001061169 |
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| Protein GI | 126442622 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.136069 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTACC TGAAACGCTT CTTGAGATTC GTCTTTTCGT GGCAGATGCT CGCGTGCATT
GCGGTGCTGC TTGTTTGCGC CGCCGTATGG TTCGTCGGCC CCCTGCTCGC GTTCGACGAG
TTGCGGCCGC TCGCGGGCGT CGTCGTGCGG GTCGCCGTCA TCGTCCTTCT CGTGGCGCTC
CTTGCGTTCT GGCTGTTGCG CTGGCCGCTC AGCCCGATCG GCGTCGCCGC ACTGTGTCTG
CTGATCTGGC ACGCGGGGCC GCTCTTCGCG TTCGGCGATC ACCGCCCGTT CGGGCCCGCG
TGGGTCCGCG TGCTGATCGT CGCCGCGATG CTCTTCTGCT ACGCCATGTA TGGTCTCTAT
CGCCTGTGGC AGGCGGTTCG GACGAACGAC GCATTGCTCA AGCGCATTCT CGAGCCGTCG
GCGGGCAAGC CGGACGCGGC GGCCCAAGCG AACATCCGTG CGGTGAGCGT GGCGGTGTCG
AAGGCGATCG GTCAACTGAA GCGCTTGCGC GGCGGTGCGT TCGGCTGGCG GCGCTTGCTC
GAAAGCGGGC GCTACCTGTA TGAACTGCCG TGGTACATGG TGGTCGGCGC GCCTGGTGCG
GGCAAGAGCG CGGCGATCGC GCGTTCCGGC CTGAAGTTTC CGCTCGCGGA TCAGATGGAG
GCATCGTCCG AGCGCGCGCG GGGCGGCACG GCCAATTGCG AATGGTGGTT CGCCAACGAG
GCCGTGTTGA TCGACACGGC GGGCCGTTAC GTGCGGCACG AGGTGCCCGG CGACGAAGAG
GCGACAGTTG CCAACGGGGC GGAGTGGAAG GGCTTTCTCG GTCTGCTTCG CAAACATCGG
CCGCGCGCGC CGGTCAATGG CGTGGTCCTG TCGGTCAGCG TCGAGGAGCT CGTCGGGCGC
ACGCCGGCCG AGCGCACCGC GCACGCAGCC ACGCTGCGCG CCCGCCTGGG CGAGTTGCAT
CAGGAACTGG GCATTCATTT CCCGGTATAC GTGATCGTCA CGAAACTCGA TTTGCTGCCC
GGCTTTCCGG AGTATTTCCA GTCGTTGACG GCCGAAGGGC GGACGCAGAT CTGGGGATTC
ACGCTGCCCT ACGACGCGGA GAACAGGCGG AGCGCGGTCG GCGCGCTGCG CGAGCATTGC
GCCGACGAGC TGAAGCGGCT GGAGATGCGT ATCGACGCGG GGCTGAACAA CCGTCTGCTC
GAAGAGTACG AAAACGATCG CCGCAAGCGG CTGTATGCGT TGCCGCAGGA GTTCCGCAGC
CTGTCGGCCG CGCTGTCGGA CATGCTCGCC CTCGTGTTTC TCGATTCACG CTACGACGAC
GCCCAGTTGC AGAACACGCT GCGCGGCGTC TACTTCACGA GCGCCGAGCA GTCGGATCAG
GTATTGGCCG CGGATCGCGA AACCATCCTG CAGCGCCTGA AGCGCCAGCT CGGCAGAATG
CTCGGCGGCG ATGCCGGCGC GCAGACGCGT GACAGCGGCG CGGTGTCGGG CAGCCGCGGC
TACTTCCTGC GCGATGTATT CCAGCATGTG ATCGTGCCGG AGGCGCATCT GGTTCGGCCG
AACGTCAGGT GGGAAGTGCG TTTTCGCCTG ATGCGCTGGG CCGGGCATCT GCTCGCCGTC
GCATTGCTGG TCTGGCTGGC GAGCGCGCTG ACGGTGAGCT TCGACAACAA TCGCGGTTAC
CTGGACGCGA TCTCGGAAAA GACAGCCGCG CTCGCCGCAC GAGTCAACGC GTACAACAAG
GCGCCGAAGC CGGCGCAGAT CGGGGGCGTA CTGGATGGCG CGCGCGATCT TCCCCAGCAT
GGCAATCTCG ATCTCGACGC GCCCGGCGCG AGCTTTCGCT ACGGCCTGTA TGTCGCACCC
GGCATCGTCG ACGCGTCCGA CGCGACCTAT CGGAGCCTGC TGCGCCGGAG CCTTCTGCCG
CAGATCGTGC GGCGCGTCGA GAATGCACTG AGCGCGCAAA TCGATGCGAA GCATGCGGAC
GAGGTCTATC GCACGCTGAC GGTCTACTTG ATGCTCGACG ACGCCGCGCG CCATGACGCG
AAGGCGGTGA AAGACTGGGT CATGCGCGAC TGGGAGCGCT CGGATAGCGC GGCCGAGATG
GGGGGGCGCA ATTTGATGGC GCGGCACCTG GACGCGCTGT TCGTCGATGC TCGGCCTTTC
GAGCCGAGCG GGCACCGGAA CGCCGCACTC GTTCAGCGCG CCCGGCTTTT CCTCAACGCG
AATCCGGCCC CGAGGCGGCT GTACGAGCGT GCGATGGCCG CGATCGAGAA GGAGGCGCCG
GAGAACTTCA CGCTCGCGCG TGCGGTCGGG CTTCAGGGCG CGGGCACCTT TCGGCTCGCC
GACGGCTCGC GGTTTCAACG CGGGATGCCC GGCTTGTATA CGTACGATGG CTACCACCAG
GTATTCAGCG CCCGGTTGCC CGAATTTCTC GCCCGTGCGC AAAGCGACGA CGCATGGGTG
ATGGGGAACG CCGGCCCCGC CGCGCGATGG GGCGACGCGA TTCGGAACAC GCAGGCCGTT
GCGGGTCGGT CTTCGCTTGC CGACGACATT CGTCGCCAGT ACCTGACGGA TTACGGCAAC
TATTGGCAAC AGTATCTGGC GGACATTCGG CCCGCGTCGT CCGGAGAGGA CGGCGCGGGC
GGCACGCTCG CATTCGATCT CGCGACGCTG CGCGCGCTCG CCGCCCCCGA TTCACCGCTC
GTGAGACTGG CGCGCGCCGT CGTTCGCGAA ACATCGCTGT CGGTCGTCGA CGCACGGGAA
GACGCGTCGT TGACCGACGC CGCGCTTTCG TCGCTCGGGC GACGATCCGG CGCGGCGAAG
GAGGTTGCCG ACGGCGCGCA GAAACTGGCG GCGCGGCGGC CGGAGCAGCG CCTCGAGAAG
GAACTGGTGG ACAACCGCTT CGCGGCGCTG CGCGAGGTGG TGACGGGGCA GGCCGACACG
GGAAGCGGGC CGGCGATGAC GGACGTGCCG GTCGCGGCGG GGGGCCGGGC GCTGCAGCTC
GATGCGATCC TCACGCTGAT CAACGAACAG TACACGCGCC TCGTCGTTGC CGACAACGCG
CTCTCGTCGC AGAGCATGCC GCCCGCGCTG GACATCGGCA CCACCTTGCA AATGGAGGCG
GAGAAACTGC CCGCGCCGCT GCGCACGGTG CTGGGCGGCA TCGCGACGCA AGCCGCCGAC
AAAGTCGGGC GCGAAGTGGG TTCGCTGCTC GCGATGCAGG TGGACTCGAG TGTCGGCAAC
GCGTGTCGCG CCGCCGTCGA CGGCAAGTAT CCGTTCGCGC GCAGCGCGCA GGAAGTCGAC
ATCGAGGATT TCAACCGCCT CTTCGCCGCG GGCGGCCTGT TCGACGCGTT TTTTCAGAAG
GCGCTCGCGC CGCATGTCGA CACCCATTCG AAGCCGTGGC GTTACAAGGC GTTGAATCCC
GGCATGCCGC CGATCCGGGG GCCGAGCCTC GAGCCGTTCG AGCGCGCCGC CGCGATTCGC
GACGTGTTCT TTCGTGAACC GGGCGCAAAG CGGATGGCGT GGAAGATGGA TGCGAAGGTG
GCGTCGATCG ACCCTGAGAT CACCGAGCTC ATCATCGACG TCGACGGCCA GTCGCAGCGC
TATGTCCACG GCCCTGTGCT GCCGTTCTCC GTGAACTGGC CCGGGCCGCG CGGCGGCGCG
ATCGCCGAGA TCACCGCGAA GCCGCGGATT CGTCCCGATA CGTCGACGAT CGCGACGACG
GGGCCCTGGG CGCTGTTTCG GCTGATCGAG CGCGGGCGGT TGACGGGCAC CACGTCGGCG
AGCCGGTTGA TGCTGGATTT CGATTTCGAC GGTCGGCACG CGGCCCTGGA GCTCAGGACG
AACGGCCAGA TGAATCCGTT GACGAGCGGC TTGCTGACGC ATTTTCGCTG TCCGGGGAGC
GTCGGTTGA
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| Protein sequence | MSYLKRFLRF VFSWQMLACI AVLLVCAAVW FVGPLLAFDE LRPLAGVVVR VAVIVLLVAL
LAFWLLRWPL SPIGVAALCL LIWHAGPLFA FGDHRPFGPA WVRVLIVAAM LFCYAMYGLY
RLWQAVRTND ALLKRILEPS AGKPDAAAQA NIRAVSVAVS KAIGQLKRLR GGAFGWRRLL
ESGRYLYELP WYMVVGAPGA GKSAAIARSG LKFPLADQME ASSERARGGT ANCEWWFANE
AVLIDTAGRY VRHEVPGDEE ATVANGAEWK GFLGLLRKHR PRAPVNGVVL SVSVEELVGR
TPAERTAHAA TLRARLGELH QELGIHFPVY VIVTKLDLLP GFPEYFQSLT AEGRTQIWGF
TLPYDAENRR SAVGALREHC ADELKRLEMR IDAGLNNRLL EEYENDRRKR LYALPQEFRS
LSAALSDMLA LVFLDSRYDD AQLQNTLRGV YFTSAEQSDQ VLAADRETIL QRLKRQLGRM
LGGDAGAQTR DSGAVSGSRG YFLRDVFQHV IVPEAHLVRP NVRWEVRFRL MRWAGHLLAV
ALLVWLASAL TVSFDNNRGY LDAISEKTAA LAARVNAYNK APKPAQIGGV LDGARDLPQH
GNLDLDAPGA SFRYGLYVAP GIVDASDATY RSLLRRSLLP QIVRRVENAL SAQIDAKHAD
EVYRTLTVYL MLDDAARHDA KAVKDWVMRD WERSDSAAEM GGRNLMARHL DALFVDARPF
EPSGHRNAAL VQRARLFLNA NPAPRRLYER AMAAIEKEAP ENFTLARAVG LQGAGTFRLA
DGSRFQRGMP GLYTYDGYHQ VFSARLPEFL ARAQSDDAWV MGNAGPAARW GDAIRNTQAV
AGRSSLADDI RRQYLTDYGN YWQQYLADIR PASSGEDGAG GTLAFDLATL RALAAPDSPL
VRLARAVVRE TSLSVVDARE DASLTDAALS SLGRRSGAAK EVADGAQKLA ARRPEQRLEK
ELVDNRFAAL REVVTGQADT GSGPAMTDVP VAAGGRALQL DAILTLINEQ YTRLVVADNA
LSSQSMPPAL DIGTTLQMEA EKLPAPLRTV LGGIATQAAD KVGREVGSLL AMQVDSSVGN
ACRAAVDGKY PFARSAQEVD IEDFNRLFAA GGLFDAFFQK ALAPHVDTHS KPWRYKALNP
GMPPIRGPSL EPFERAAAIR DVFFREPGAK RMAWKMDAKV ASIDPEITEL IIDVDGQSQR
YVHGPVLPFS VNWPGPRGGA IAEITAKPRI RPDTSTIATT GPWALFRLIE RGRLTGTTSA
SRLMLDFDFD GRHAALELRT NGQMNPLTSG LLTHFRCPGS VG
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