Gene BURPS668_A0159 details

Gene Information

• Locus tag: BURPS668_A0159
• Symbol: sciM
• ID: 4887632
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 668
• Kingdom: Bacteria
• Replicon accession: NC_009075
• Strand: +
• Start bp: 139840
• End bp: 140322
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 640130100
• Product: SciM protein
• Protein accession: YP_001061165
• Protein GI: 126443630
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 41
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGCACG ACATTTTCCT CAAGATCAAC GGTATCGATG GCGAGGCGGA AGACGCAACC 
CACAAGGGCG AAATCGAGGT CTTGAGCTGG TCGTGGAACG TCAGTCAGCA ATCGAACATG 
CACCTGGGTT CGGGGGGCGG CGCGGGCAAG GCGACGATCG ATGATCTGCA GTTCGAACAT 
TACATCGATC GCGCGAGCCC GAATCTCGTT CAATACTGCT TGCTCGGCAA GCATATCGAC 
GAAGCCCGGC TCGTGGTGCG TAAGGCGGGC GGCAGCCCGC TCGAATACAT CAAGCTCACG 
ATGAGCGATG TGCTCGTTAC GCAGGTGAGC CCGGCAGGCG TGGCTCAGGA CGAATCGCGC 
CCGCGTGAGC TCGTTCGGCT GTCGTTTTCG CGCCTGAAGC AAGAGTATGT CGTCCAGAAC 
GCGCAGGGCG GCAGCGGCGG CGCAATCACC GCGACTTTCG ACATCAAGAA GAACGCGGCG 
TAA 

 

Protein sequence

MSHDIFLKIN GIDGEAEDAT HKGEIEVLSW SWNVSQQSNM HLGSGGGAGK ATIDDLQFEH 
YIDRASPNLV QYCLLGKHID EARLVVRKAG GSPLEYIKLT MSDVLVTQVS PAGVAQDESR 
PRELVRLSFS RLKQEYVVQN AQGGSGGAIT ATFDIKKNAA