| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_3639 |
|---|
| Symbol | |
|---|
| ID | 4882957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | + |
|---|
| Start bp | 3564098 |
|---|
| End bp | 3565504 |
|---|
| Gene Length | 1407 bp |
|---|
| Protein Length | 468 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640129567 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001060644 |
|---|
| Protein GI | 126442128 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.00507255 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCGAACG CGACGCGAAT TAACCGACCA ACGGCCCAAT CACATTTAAG CGGATTTGAC
ATGAGTTATT CGGCCAAGGT GCTCTGGGGA GAAGGCCTCT TTCTGAGGCC GCAGCACTTT
CAGCGGCAGG ACGCGTATCA CGAAGCGCGC CTGTTCGAAT CGATCCAGGC GATCCAGCCG
TACAACTGGG GCGTGCGTTC GGTGCGGTTC GATCGCGACG CGCTCGGCAG CAACGTGCTG
CGCGCGAGCG AACTGTCGCT CGTGTTTCCG GACGGCGCGC TCTACTCCGC GCCGCAAGCC
GACGAACTGC CGCCGCCCAT CGCGCTCGAC ACGCTGCCCG AAGGCATCAA CGAATTCACG
TTCTACCTCG CGCTTCACCC GCTGCGCGAG ACCGGCTCGA ACTACGCGGA CGACCGCGAC
GCCGGCTTCG TGTCGCGCTT CGTCAGCGAA CAGGCGAGCG TTGCCGATCA CTTCACCGAC
GCCGCGGAAG CGGACATCAC GTTCCTGAAG ACGAACGTGA AGCTGATCGC GCACAGCGAG
CCGCGCGACC AGTTGCTGTC GATCCCGCTC GTACGCGTGC GCCGCACCGC GACGTCCGGC
TTCGAGATCG ACGACAGCTT CGTGCCGCCG TGCCTCGCGA TCGAGGCGTC GCCGATCCTG
CACCAGCGCC TGCGCCAGTT GATCGACGCG CTGCAGGCGA AGGTGAATGC ACTGTACGGT
TTCCATCGCG AGCCGACGAA GAACATCATC GAGTTCCGCT CGGGCGACAT CGCATCGTTC
TGGCTGCTGC ACACGGCGAG CGCCGCGTTC GCCGCGCTCG CGCACCTGCA CCAGCATTCG
GCCTTGCATC CGGAGCGGCT GTTCCAGGAA CTACTGCGCC TCGCGGGCCA GTTGATGACG
TTCTCGAAGG GCTACGTGCT CGCCGATCTG CCCGCGTACC GGCATGACGA TCCGGGCCCG
GGCTTCGCGC GGCTCGATTC GATCCTGCGC GAGCTGCTCG AGACCGTGAT CTCGACGCGC
TACTTCGCGA TCACGCTCGA GGAAGTGCGG CCGTCATTCC ATGTCGGGCG GCTCGACTCG
GGCAAGATCG ACGACAAGAC CGCGTTCTAT CTCGCGGTGT CGGCCGACAT GCCGTCGGTC
GAACTCGTCG ACGCGGTGCC CGCGCGCTTC AAGGTGGGCG CGCCGGACGA CGTCGACAAG
CTCGTGCTCT CCGCGATGCC GGGCGTGCGC CTCGCGTACA CGCCGCAGGT GCCGCCCGCG
ATTCCCGTGC GCCCGGGCGC ATGCTATTTC GCACTCGATG CGCGCAGCCC GCTCTATGAG
CGGATGCTGC AGGCCCAGTC GGCGATGATC TATGCGCCGT CCGGAATCAA CGATCTCAAA
TTCGAACTGA TCGCCGTCAC GTCATGA
|
|---|
| Protein sequence | MPNATRINRP TAQSHLSGFD MSYSAKVLWG EGLFLRPQHF QRQDAYHEAR LFESIQAIQP
YNWGVRSVRF DRDALGSNVL RASELSLVFP DGALYSAPQA DELPPPIALD TLPEGINEFT
FYLALHPLRE TGSNYADDRD AGFVSRFVSE QASVADHFTD AAEADITFLK TNVKLIAHSE
PRDQLLSIPL VRVRRTATSG FEIDDSFVPP CLAIEASPIL HQRLRQLIDA LQAKVNALYG
FHREPTKNII EFRSGDIASF WLLHTASAAF AALAHLHQHS ALHPERLFQE LLRLAGQLMT
FSKGYVLADL PAYRHDDPGP GFARLDSILR ELLETVISTR YFAITLEEVR PSFHVGRLDS
GKIDDKTAFY LAVSADMPSV ELVDAVPARF KVGAPDDVDK LVLSAMPGVR LAYTPQVPPA
IPVRPGACYF ALDARSPLYE RMLQAQSAMI YAPSGINDLK FELIAVTS
|
|---|
| |