Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS668_3330 |
Symbol | secD |
ID | 4882531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 668 |
Kingdom | Bacteria |
Replicon accession | NC_009074 |
Strand | + |
Start bp | 3268226 |
End bp | 3270253 |
Gene Length | 2028 bp |
Protein Length | 675 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640129258 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001060341 |
Protein GI | 126438812 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.12158 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCGTT ATCCAATCTG GAAATATGTG GTGATGGTCG TGGCGCTCGC CATCGGCTTT CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTATC GAGCGGCAAG GCCACGGTCA AGCTCGGCGC CGATACGCTC GCGCAGGTCG AAGCAGCGCT CAAGGCCAAC CAGGTCGCGG CCGACGACGT CACGTTCGAC AATTCCAGCG CCAACGCGAC CATCCGCGTG CGCCTGAAGG ACACCGACAC GCAATTGCGC GTGAAGGACA TGCTGCAAAA GACGCTGAAC GCCGATCCGA ACGATCCGCA GTACGTCGTC GCGTTGAACC TGCAGAGCGC GTCGCCGCGC TGGCTGAGCG CGCTGCACGC GCTGCCGATG TATCTCGGCC TCGATCTGCG CGGCGGCGTC CACTTCCTGC TGCAAGTCGA CATGACGGGC GCGCTCACGA AGAAGCTCGA TTCCGACGCG TCCGACGCCC GCACGCAACT GCGCGACAAG GGCATTCGCG ACGGCGGCGT CGCCCGCGTC GATCAGTCGG TCGTCGCGAA CTTCGCCGAC CAGGACACCG CCGAGCAAGC GCGCAAGCTG CTCGCCTCGT CCGTCTCCGA ACTCCAGTGG GCGACGCAGC CGGGCGGCGG CGGCTATCAG GTCGTCGGCA CGTTCACGCC GGCCGTCCAG AAAGCCGTCG AGGAAGCGGC GCTCAAGCAG AACCTGACGA CGCTGCACAA CCGCGTCAAC GAACTCGGCG TGTCCGAGCC GATCCTCCAG CAGCAGGGCA ACGACCGGAT CGTCGTCGAG CTGCCGGGCG TGCAGGACAC CGCGAAGGCG AAGGACATCA TCGGCCGCAC CGCGACGCTC GAGGCGCGCC TCGCCGATCC GCTGAACACG CACCCGAATC CGAACGATCC GGTGCCGCCG GGCGAGGAAC TGTTCACGCA GGGCAACCAG GCGCCGGTGC TGCTCAAGAA GCAGGTGATC TTCACGGGCG ACCGCATCAT CGACGCGTCC GCGGGCTTCG ACGAGCATCA GCGTCCGTCC GTGAACATCC GCCTCGATTC GGCGGGCGGC CGCGCGGTGC GCGCGGTGTC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC GAGAAGGGCA AGGGCGAAGT GCTGACCGTC GCGACGATCC AGTCGGAGCT CGGCGACCGC TTCCAGATCA CGGGCCAGCC GACCCCGCAG GCGGCCGCCG ATCTCGCGCT GCTGCTGCGC GCGGGCTCGC TCGCCGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC GGCGCGGACA ACATCCGGAT GGGCTTCCAT TCGGTGATCT GGGGCTTCGT CGCGATCGCC GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTCGTAT CGGTGCTCGG CCTGTCGGTG AACCTGCTGC TGCTCGTCGC GGTGCTGTCG CTGATGCAGG CGACGCTCAC GCTGCCCGGC ATCGCGGCCA TCGCGCTCGC GCTCGGCATG GCGATCGACT CGAACGTGCT GATCAACGAG CGCATCCGCG AGGAGCTGCG CCGCGGCGCC TCGCCGCAGA TCGCGATCCA GGAAGGCTAC GCGCACGCGT GGGCGACGAT TCTCGATTCG AACGTGACGA CGCTGATCGC GGGCCTCGCG CTGCTCGCCT TCGGCTCGGG CCCGGTGCGC GCGTTCGCGA TCGTGCACTG CCTCGGCATC CTGACGTCGA TGTTCTCCGC GGTGTTCTTC TCGCGCGGCC TCGTGAACCT CTGGTACGGC GGGCGCAAGA AGCTGCAGTC GCTCGCGATC GGCCAGGTGT GGCGCCCCGC CGCCGCCGAA GCCGGCGCCG CGCCGCAGCT CGGCCAGGAC GCGCGCGCGA ACGCGCCGCA GCCCGGCGCG CGCGTCGCCG CGCCGAAGCA GCCGGCGGGC GCGCCGCGCA CCGGCAAGCC GGTCGCGCGC CGCCGCTCGG GCCCGGGCGT GCCGCCCAAG CAGGGCTCGT CCAACTAA
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Protein sequence | MNRYPIWKYV VMVVALAIGF LYTLPNFFGE APAVQVSSGK ATVKLGADTL AQVEAALKAN QVAADDVTFD NSSANATIRV RLKDTDTQLR VKDMLQKTLN ADPNDPQYVV ALNLQSASPR WLSALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARTQLRDK GIRDGGVARV DQSVVANFAD QDTAEQARKL LASSVSELQW ATQPGGGGYQ VVGTFTPAVQ KAVEEAALKQ NLTTLHNRVN ELGVSEPILQ QQGNDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPLNT HPNPNDPVPP GEELFTQGNQ APVLLKKQVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG RAVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR AGSLAAPMDI IEERTIGPSL GADNIRMGFH SVIWGFVAIA VFMIAYYMLF GVVSVLGLSV NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RIREELRRGA SPQIAIQEGY AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG GRKKLQSLAI GQVWRPAAAE AGAAPQLGQD ARANAPQPGA RVAAPKQPAG APRTGKPVAR RRSGPGVPPK QGSSN
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