| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_2112 |
|---|
| Symbol | |
|---|
| ID | 4882006 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | + |
|---|
| Start bp | 2102559 |
|---|
| End bp | 2103776 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640128040 |
|---|
| Product | major facilitator superfamily permease |
|---|
| Protein accession | YP_001059147 |
|---|
| Protein GI | 126439977 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.954954 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCAAG CAAAGGCAAG ACACCCGCTC CTCGTCTGGC TGCTGATCGT CGGCACCGGC
TTCGTCGTGA TGGCGCGCGC GATGAGCCTG CCGTTTCTGG CGATCTACCT GCACGAACGG
ATGGGGCTCG ACGCGGCGAC GATCGGCCTG CTGCTCGGCA CGGGCGCACT CGTCGGCACG
TTCGGCGGCT TCTTCGGCGG CCATCTGTCC GACGTGCTCG GCCGGCGCAA GGTGCTGACC
GGCTGCCTGC TCGTATCGAG CCTGTCGTTC GCCGCGCTTC ATTTCGCGGC CGACGCGTGG
CAGGTCTTCG TGATCAACCT CTTCATCAAT CTCGCGAGCT CGTTCTACGA TCCGGTCTCG
AAAGCGACCA TCAGCGACAA TCTGCCGCCC GAGCAGCGGC TGCGCGCATT CGCGCGGCGC
TACGTGGCGA TCAACATCGG CTTCGCGATC GGGCCGCTGC TCGGCGCGTC GCTCGGCCTG
CTCGACAAAT CCCCCGTGTT CCTCATCACG GGCGCCGTCT ACCTGCTGTT CTCGATCGCG
ATCTACGCGA TCACGGCCCG GCTCGTGTTC GGCCGCGCGC CGCACGAAGC GGCCGCCTCC
GAGTTGCCGC TCGCCGCGAA GCTGCGCGTC ATCGGCACCG ACCGGCGCCT CGTCCTCTTC
ACCGCGGGTA GCATGCTCGC GATCGCCGTG CACGGCGAAA TGTCGGTCAC GTTCTCGCAA
TACCTGATCG GCGCGTTCGA CGACGGGCTC AAGATGTTCG CCTGGCTGAT GAGCACGAAC
GCGATCACGG TCGTCTTGAG CCAGCCGTTG CTGAACCGCA TCGGCGAACG GCGCGGGCCG
TTCACGTCGC TCACGCTCGG CGCGATCCTG CTCGCGATCG GCGCGGCCGG CTTCGCGAAT
TCGCCGAACA TGATCGCGCT CGTCGTGTCG ATGGTCGTCT TCACGTGGGG CGAAGTGCTG
CTGATCCCGT CGGAATACGC GGTCCTCGAC AGCATCACGC CCGAGCCGCT GCGCGGCATC
TATTACGGCG CGCATTCGCT CAGCAACGTC GGCAACCTGC TCGGGCCCTG GCTTGGCGGC
CTCGTGCTGC TGCACTACGG CGGCGCCGCG ATGTTCTACG GCATGGGCTT CATCGCGCTG
CTCAGCCTGC TCACGTTCGC CGTCGGCTCG CAGATCAAGC CCGCGCCGGC GGGCCGGCTC
GAAGTCCAGA ACCGCTGA
|
|---|
| Protein sequence | MSQAKARHPL LVWLLIVGTG FVVMARAMSL PFLAIYLHER MGLDAATIGL LLGTGALVGT
FGGFFGGHLS DVLGRRKVLT GCLLVSSLSF AALHFAADAW QVFVINLFIN LASSFYDPVS
KATISDNLPP EQRLRAFARR YVAINIGFAI GPLLGASLGL LDKSPVFLIT GAVYLLFSIA
IYAITARLVF GRAPHEAAAS ELPLAAKLRV IGTDRRLVLF TAGSMLAIAV HGEMSVTFSQ
YLIGAFDDGL KMFAWLMSTN AITVVLSQPL LNRIGERRGP FTSLTLGAIL LAIGAAGFAN
SPNMIALVVS MVVFTWGEVL LIPSEYAVLD SITPEPLRGI YYGAHSLSNV GNLLGPWLGG
LVLLHYGGAA MFYGMGFIAL LSLLTFAVGS QIKPAPAGRL EVQNR
|
|---|
| |