Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS668_1798 |
Symbol | rnr |
ID | 4885277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 668 |
Kingdom | Bacteria |
Replicon accession | NC_009074 |
Strand | + |
Start bp | 1772448 |
End bp | 1774964 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640127726 |
Product | ribonuclease R |
Protein accession | YP_001058835 |
Protein GI | 126439924 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.0807236 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGGCG CGCCCGTTCG GCTCCGCTTG CCGCGGTCGC GCAAGCCAAA CGCAACGAGA AAAATCATCG ACAAGCCCTT GAGCAAGTAT CCGTATCCCA TCCCGAGCCG CGAAGAGATT CTCGGCGTGC TGCGCACGAG CGACGCGCCG CTTGCGGCGA ACGACATCGC CGAAGCGCTG TCGATCAAGC GCCAGGAGCG CGAAGGATTT TTCCGGCGCG TCGCCGCGAT GGAGCGCGAC GGCCAGATCC GTCTCGACAA GCGCGGCCAT TATCAACTGA CGCATCCGTC CAACTTCGTC GCGGGCCGCG TGCAAGGCCA CCGCGACGGC TACGGCTTCG TGATTCGCGA CGACGGGCAG GATGATCTGT TCCTGCCGAA CGCCGAGATG CAAAAGGTCA TGCACAACGA CCGCGTGCTG GCGCGGATCG TCGGCTATGA TCGGCGCGGC CGGCCGGAAG GGCACGTCGT CGAGGTGACC GAGCGGGCGA ACAAGCGCGT GATCGGGCGC CTCCTGAACG AGAACGGCGC GCTCATCGTC GCGCCCGAGG ACAAGCGGAT CAGTCACGAC ATCCTCGTCA CGCAGAACGC GAAGAAGGCG AAGGTCGGGC AGGTCGTCGT CGTCGAGCTC ACCGATTTCC CGAGCCGTCA TTCGCAGCCG CTCGGCCGCG TCTGTGAAGT GCTCGGCGAT ATCGACGATC CCGGCATGGA GATCGAGATC GCGGTGCGCA AGTACGGCGT GCCGCACGAA TTCGGCGCGC AAGCGCTCGG CGAGGCCGCG GCGCTGCCGG ACAAGGTGCG GCCCGCGGAT CTGCGCTACC GCGTCGACTT GCGCGACGTG CCGCTCGTCA CGATCGACGG CGAGGACGCG CGCGACTTCG ACGACGCCGT GTACTGCGAG CCCGCCGCGG TCGGCCGCGG CGAGGGCTTC CGGCTCATCG TCGCGATCGC GGACGTGTCG CACTACGTGC AGCCAGGCAG CCCGCTCGAC GCCGACGCGG TCGAACGCAG CACGTCGGTC TATTTCCCGC GCCGGGTGAT TCCGATGCTG CCGGAGAAGC TGTCGAACGG GCTCTGCTCG CTGAATCCGC AGGTCGATCG CTGCGTGCTC GCGTGCGACA TGATCATCAA CGCGCGTGGC GACATCAAGG CGTATCAGTT CTATCCGGCC GTGATCCACT CGGCCGCGCG GCTCACGTAC ACCGAAGTGG CCGCGGTGCT CTCGAACACG AAGGGGCCGG AGGCCGCGCG CCGCGCCGAG CTGATGCCGC ACCTGCAGCA CCTGTACGGC GTCTACAAGG CGCTCTTCGT CGCGCGGCAG AAGCGCGGCG CGATCGACTT CGACACGACC GAGACGTACA TCGTCTGCAA CGCACAGGGC AAGATCGAGC AGATTCTGCC GCGCCAGCGT AACGACGCGC ATCGGCTGAT CGAGGAATGC ATGCTTGCCG CGAACGTCTG CGCGGCCGAT TTCCTCAAGC GCAACAAGCA CCCGGGCCTC TACCGCGTGC ACGCGGGGCC GACGCCCGAA AAGCTCGAGA ATCTGCGCGC GTTCCTGCGC GACATGGGGC TCACGCTGGG CGGCGGCGAC ACGCCGCACG CGAGCGATTA CGCGGCGCTG ATGGCGCACA TCCGCGACCG GCCCGACGCG CAGATGCTGC AGCCGATGCT GCTGCGCTCG ATGCAGCAGG CGGTCTACAG TCCGGACAAC ATCGGCCACT TCGGTCTCGC GTACGACGCG TACGCGCACT TCACGAGCCC GATTCGCCGC TATCCCGATC TGCTCACGCA CCGCGCGATC TACGCGATCC TGTCCGGCAA GAAGTACACG CCGAAGTCGC CGGAAGGCGT CGAGCTGAAC ACCGCGCTGT CGCCGCGCGC GCGCGCGATG CAGCGCGAGG ACGACGAGGC GCGCGGCCGC GCGCGGTCGA ACGCGGCGAT CTGGGAGGAG CTCGGGCTGC ACTGCTCGTC CAACGAGCGG CGCGCGGACG AAGCGTCGCG CGACGTCGAG GCATGGCTCA AGTGCTATTT CATGCGCGAC AAGCTCGGCG AGGAATACGG CGGGATGGTG AACGGCGTCA CGTCGTTCGG CATCTTCGTG CAGCTCGATG CGCTTTTCAT CGAAGGCCTC GTGCATGTGA CCGAGCTCGG CGCCGATTAT TTTCAGTACG ACGAAGTCAA GAACGAACTG CGCGGCGAGC GCACGGGCAT TCGCTACCGG CTGTCCGACC GCGTGCGCGT GCAGGTGAGC CGCGTCGATC TCGATGCGCG CAAGATCGAT TTCCGCCTCG TGCGCGAGAC GCCCGTGAAG GCGCCGCGCC CGGCATCGGC GGTGGCGGCC GAAGCGGGCG CGGGCGGGCC GCGCGTGCGC GCGCTGCCGC CCGCCGAAGG CGCCGCGCGA CGCAAGAAGG CCGCGAGCGC GCCGAGCGCG GCGGTGAAGG AGGCCCGGGC GGCCCGCAAG AAGGGCGCCG CGTCGAAGCC GGCCGCGAAG AAGGCGCGTT CGCGCAAGAA GTACTGA
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Protein sequence | MSGAPVRLRL PRSRKPNATR KIIDKPLSKY PYPIPSREEI LGVLRTSDAP LAANDIAEAL SIKRQEREGF FRRVAAMERD GQIRLDKRGH YQLTHPSNFV AGRVQGHRDG YGFVIRDDGQ DDLFLPNAEM QKVMHNDRVL ARIVGYDRRG RPEGHVVEVT ERANKRVIGR LLNENGALIV APEDKRISHD ILVTQNAKKA KVGQVVVVEL TDFPSRHSQP LGRVCEVLGD IDDPGMEIEI AVRKYGVPHE FGAQALGEAA ALPDKVRPAD LRYRVDLRDV PLVTIDGEDA RDFDDAVYCE PAAVGRGEGF RLIVAIADVS HYVQPGSPLD ADAVERSTSV YFPRRVIPML PEKLSNGLCS LNPQVDRCVL ACDMIINARG DIKAYQFYPA VIHSAARLTY TEVAAVLSNT KGPEAARRAE LMPHLQHLYG VYKALFVARQ KRGAIDFDTT ETYIVCNAQG KIEQILPRQR NDAHRLIEEC MLAANVCAAD FLKRNKHPGL YRVHAGPTPE KLENLRAFLR DMGLTLGGGD TPHASDYAAL MAHIRDRPDA QMLQPMLLRS MQQAVYSPDN IGHFGLAYDA YAHFTSPIRR YPDLLTHRAI YAILSGKKYT PKSPEGVELN TALSPRARAM QREDDEARGR ARSNAAIWEE LGLHCSSNER RADEASRDVE AWLKCYFMRD KLGEEYGGMV NGVTSFGIFV QLDALFIEGL VHVTELGADY FQYDEVKNEL RGERTGIRYR LSDRVRVQVS RVDLDARKID FRLVRETPVK APRPASAVAA EAGAGGPRVR ALPPAEGAAR RKKAASAPSA AVKEARAARK KGAASKPAAK KARSRKKY
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