Gene BURPS668_1580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS668_1580 
Symbol 
ID4882441 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 668 
KingdomBacteria 
Replicon accessionNC_009074 
Strand
Start bp1544522 
End bp1547329 
Gene Length2808 bp 
Protein Length935 aa 
Translation table11 
GC content72% 
IMG OID640127508 
ProductRhs element Vgr protein 
Protein accessionYP_001058621 
Protein GI126439104 
COG category[S] Function unknown 
COG ID[COG3501] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCGTGA TCACGCAATT CACGTCGCTT TTCAGCGCTG CCAATTGTCT CTATTGCCTC 
GACGGTCCGG GCGAAATCGC GTCGCTGCAG ATCGAGCGCT GGGTGGGGCG GGAGACGCTC
TCCGAGAACT TCCAGTGGGA TGTCTACGCG CTCGCGACCG ATCCCGGCCT CGACCTCGAC
GCGATGCTCG GGCAGCGCGT GACGATCCGC ACGGCGCTCG CGAACGGCAC GAGCGCCGTG
CGCAGCGGGC TCGTGGCGCA GGCCGAGTGC ATCGGCTACG ACGCCGGCCT CGCGCGCTAC
TGCCTGCAGC TCGTGCCGTG GCTCGCCGCG CTCGCGCACG GCCGCGACGA GCGCACGTTC
GTGCGGCAGG GCGTCGCCGA CGTGCTCGGC GCGGTGTTCG CGCCGTACGG CGCGATCGCC
CGCTGGCGCT TCACCGCGGA CGCGAACCAG CGCATCGCGG AACTCGGCGC GCGCGACTAC
CGCGTGCAGT ACCGCACCCA CACGCATTTC GATTTCGTCC GGCACGTGCT TGCCGAAGCG
GGTCTCGGCT TTTGCTTCGT CGAGGAGGCG GACGCGCCCG CGGGCCACAC GATGCTGATC
TTCGACGACA GCACGCAGTT GCCCGAGGAC GAGACTTCCG CGCGCATGGG CGGCGTGCCG
CAGCGGCTGA GCGGCACGGC GACCGAGCCG GACGACGTGA TCGTCGGCAT CGGGCAGTCG
CTGTCGCTGA CCGCGGATCG CGTCACGCTG ATCAGCAGCG ACTACCGCGG CAACCAGTCG
ACGAGCGCGA CGGCGAGCCT CGGCAATCCG GCCGGATCGC GCGAGCTGTA CGACGACGTC
GGGCCGGAAG CGTTCGACAG CCTGCGCGAG GCCGACGCCG CCGCGCGGCG GCACGCGGAC
GCGATCGTCT CGGCGGCGCG CTTCTGGACA GGCTACGGCA CGTTGCGCAC CGCGCGCGCC
GGCCGCGCGC TGCGCATCGC GGGCGCGACG TGGCGCATGT CGCGCGGCGG CGCGCAGGCG
CCCGATGCGT TCGTGTTGAC GCGCGTCGAT CAGATCGGCA TCAACAATTT GCCCGCGACG
GTGATGGAGC GCGTCGAGCG CAGCCTCGGC CCGCTGCCGC CCGCGAATCT CGACGCGCGC
GTGCTCGCGC AGGCGAAGGC GGGCGGCTAT GCGAACCGGT TCGACGCCGC GCCGCGCGAC
CTGGCATGGC GCCCGACGCT GGAGGACGGC ACCGGCCAGC GACTGAACCC GGTGCCGACG
GCGCTCGGCG CGCAGACGGC GATCGTCGTC GGGCCGCAGG GCGAGACGCG GCCGGGCTCG
ACGGGCCCGG TGCATACCGA CGCGCAGGGC CGGTTGCGGC TGCGCTATCA CTGGCAGGCG
GACGGCGACG CGGGCACCTA TCCGACGCGC GCGATGCAGC GGCTCGCGAG CGAGGGGCAC
GGGCTGCAGC AGACGCCGCG GATCGGCCAC GAAGTGCTCG TGCAGTTCGT CAACGGCCTC
GTGCACCGGC CGATCGTGCT CGGCGGGCTG TTCAACGGCC GCGGCGAGGG CGGCGAAGCG
CCGACGCCCG GCGGCGAAGC GGGGCAGCCG CTCGACGAAT CGGTCTACGC ACAGGCGAGC
GACCACGCGG CGAGCGCGCA GGGCAATCTT GCGGGCGGCC ATAGCCCCGC GTGGCACGGC
GCGGGCGGCG GCGCGAAGCG CCACGATCAC GCGGGCGCGC TGTCCGGCTT CAAGAGCCAG
GGGTTCGACG GCCAGGGCTA CAACCAGCTC GTCGCGGACG ATACCGATCG CATGGGCCGC
ATGCAGATGG CGACGACGCA CGCGGCGACC CAGCTCAACA TCGGCCACTT GCGGCATCAG
GCCGACAACT ATCTCGGCAG CTTCCGCGGG CAAGGCGTCG AGCTGCGCTC GGACGCGTAC
GGCGCGCTGC GCGGCGCGCG CGGCGTGCTG ATCTCCAGCT ATGCGCCGAC GGGGCCGTCG
CAGCCGGCGG GCGATGCGTC GGCGCTGCAG TCGCTGCTCG CGCAACAGGC GGCGCTCGCG
AAGCTTCTCG ACAAATCGGC GGACACGCAC AAGACCTTGC CGTTCGCCGC GCAGCGTGGC
GCGCAGCGGG CCGGACAGTC GTCGATGAAC GGCGACGCCG CGCCGCTCGA CGCGCTCGGG
AAGAGTTTCG CGACGACGGT CGGCGCCGAC GGCTACGCGC AGGCGTCGGC CGACGCATCG
CGCCGCGCGA CGGGCAATGC GCTGCCGCAT ACCGGCGACG CGGTGCTCGG CGTCGAGGCG
AAGGGCGGCC AGGGGCTGCT GGCCGGCCAG TCGCTGCAAT GGGCGGCGGG CGAGACGCTG
ACCATCGGCA GCGGCAACGA CACCAACCTC GCGGTCAACC GGACGTTGCG CGTGCACAGC
GGGCAGGGCA TCGGCTGGCT TGCCGGCGCG AATGGCGCGA ACGGCGCGCA GGGCGTCGGC
ATGAGCGTGA TCGCCGGCAA GGACGATCTG GCGCTGCAGG CGCAGCACGA CCTGATGGCG
CTGCGCGCGC GCGACGATAT GAGGGTCGCG TCGATCGGCG CGGATGTCGA GATCGCGGCG
AAGCAGACCG TGCGGCTCGC GGTCAGCGGC GGCGCGCATC TGACGATCGA AGGCGGCAAC
GTCACGTTCG GCTGCCCGGG CTCGCTCGTC GTTCATGCGG CCCAGCATAC GTTCGTCGGG
CCGGATCAAC TGGCTCCCGC GCTGCCGCAG TTTCCCGAGA AGGTGTGCGT CGAATGCCTG
AAGCACGCGA TGCAATCGGG CAGCGCACTG GCCGGCAAGG CGATCTGA
 
Protein sequence
MSVITQFTSL FSAANCLYCL DGPGEIASLQ IERWVGRETL SENFQWDVYA LATDPGLDLD 
AMLGQRVTIR TALANGTSAV RSGLVAQAEC IGYDAGLARY CLQLVPWLAA LAHGRDERTF
VRQGVADVLG AVFAPYGAIA RWRFTADANQ RIAELGARDY RVQYRTHTHF DFVRHVLAEA
GLGFCFVEEA DAPAGHTMLI FDDSTQLPED ETSARMGGVP QRLSGTATEP DDVIVGIGQS
LSLTADRVTL ISSDYRGNQS TSATASLGNP AGSRELYDDV GPEAFDSLRE ADAAARRHAD
AIVSAARFWT GYGTLRTARA GRALRIAGAT WRMSRGGAQA PDAFVLTRVD QIGINNLPAT
VMERVERSLG PLPPANLDAR VLAQAKAGGY ANRFDAAPRD LAWRPTLEDG TGQRLNPVPT
ALGAQTAIVV GPQGETRPGS TGPVHTDAQG RLRLRYHWQA DGDAGTYPTR AMQRLASEGH
GLQQTPRIGH EVLVQFVNGL VHRPIVLGGL FNGRGEGGEA PTPGGEAGQP LDESVYAQAS
DHAASAQGNL AGGHSPAWHG AGGGAKRHDH AGALSGFKSQ GFDGQGYNQL VADDTDRMGR
MQMATTHAAT QLNIGHLRHQ ADNYLGSFRG QGVELRSDAY GALRGARGVL ISSYAPTGPS
QPAGDASALQ SLLAQQAALA KLLDKSADTH KTLPFAAQRG AQRAGQSSMN GDAAPLDALG
KSFATTVGAD GYAQASADAS RRATGNALPH TGDAVLGVEA KGGQGLLAGQ SLQWAAGETL
TIGSGNDTNL AVNRTLRVHS GQGIGWLAGA NGANGAQGVG MSVIAGKDDL ALQAQHDLMA
LRARDDMRVA SIGADVEIAA KQTVRLAVSG GAHLTIEGGN VTFGCPGSLV VHAAQHTFVG
PDQLAPALPQ FPEKVCVECL KHAMQSGSAL AGKAI