| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_0007 |
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| Symbol | gspD |
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| ID | 4884762 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 668 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009074 |
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| Strand | + |
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| Start bp | 8386 |
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| End bp | 10659 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640125935 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_001057062 |
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| Protein GI | 126441466 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAA CTCGCTTTGC TTTGCGGCGC GTCGCAACGG CGCTCGTCGT CGCCGGAATT
GTCGCCGCGC AGGCCGCTCA CGCTCAGGTC ACGCTCAATT TCGTCAATGC GGACATCGAT
CAGGTCGCCA AGGCGATCGG CGCCGCGACG GGCAAGACGA TCATCGTCGA TCCTCGCGTC
AAGGGGCAGC TGAACCTCGT CGCCGAGCGT CCGGTGCCCG AAGATCAGGC GCTGAAGACG
CTGCAGTCCG CGCTGCGGAT GCAGGGCTTC GCGCTCGTCC AGGATCACGG CGTCCTGAAG
GTCGTGCCGG AAGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTACATCGG CAACGCGCCG
CAGGCGCGCG GCGACCAGGT GGTCACGCAA GTGTTCGAGC TGCGCAACGA ATCGGCGAAC
AACTTGCTTC CGGTGCTGCG CCCGCTGATC TCGCCGAACA ACACGATCAC CGCGTATCCG
GCCAACAACA CGATCGTCGT CACCGATTAC GCGGACAACG TGCGCCGGAT CGCGCAGATC
ATCGCGGGCG TCGACAGCGC GGCGGGCTCG CAAGTCGCCG TCGTGCCGCT CAAGAACGCG
AATGCGATCG ACATCGCCGC GCAACTGACG AAGCTGCTCG ACCCGGGCGC GATCGGCAAC
ACCGACGCGA CGCTGAAGGT CACCGTGCAG GCCGATCCGC GAACCAATGC GCTGCTGCTG
CGCGCATCGA ACGCGCAGCG CCTCGCCGCG GCGAAGAAGA TCGCGCAGCA GCTCGACGCG
CCGAGCGGTG TGCCGGGCAA CATGCACGTC GTGCCGCTGC GCAATGCGGA AGCGGTGAAA
CTCGCGAAGA CGCTGCGCGG GATGCTCGGC AAGGGCGGCG GCGAAAGCGG CTCGTCGGCG
AGCTCGAACG ACGCGAACGC GTTCAATCAG GGCGGCTCGC AAAGCGGCTC GAACTTCTCG
ACGGGCGCAT CGGGCACGCC GCCGCTGCCG TCGGGGCTGT CGTCGAATTC ATCGGGCGGC
GCGGGCGGCA CGACGGGCGG CGGCGGGCTC GGCAATGCGG GGCTGCTCGG CGGCGACAAG
GACAAGGGCG ACGACAACCA GCCGGGCGGA ATGATCCAGG CGGACGCGGC GTCGAATTCG
CTCATCATCA CCGCGTCGGA TCCGGTATAC CGGAATCTGC GGGCCGTGAT CGACCAGCTC
GATGCGCGGC GCGCGCAGGT GTACATCGAG GCGCTGGTCG TCGAGCTGCA GGCGACGACC
AGCGCCAATC TGGGCATTCA ATGGCAGGTT GCGAACAACG CGCTCTATGC GGGCACCAAT
CTGGTGACGG GGCAGACCAA CCTCGGCAAC AGCATCGTCA ATCTGACGGC GGGAGCCGTG
ACCAATCCGG GCGGCACGCT GGGGTCGCTG GGCTCGATCA CGAACGGCCT GAACATCGGT
TGGTTGCACA ACATGTTCGG CGTGCAGGGT TTGGGCGCCC TGCTGCAGTT CTTCGCGGGC
TCGAGCGACG CGAACGTGCT GTCGACGCCG AACCTCGTCA CGCTGGACAA TGAGGAGGCG
AAGATCGTGG TCGGCCAGAA CGTGCCGATT CCGACGGGCT CGTACTCGAA CCTGACGAGC
GGCACGACCG CCAACGCGTT CAACACATAC GACCGGCGCG ATGTCGGCCT GACGCTGCAC
GTGAAGCCGC AAATCACCGA GGGCGGCATT CTGAAGCTGC AGCTGTACAC GGAGGATTCC
GCGGTGGTGC CCGGCACGAA CACGACGTCG GCCAATTCGC CCGGGCCGAC GTTCACGAAG
CGCTCGATCC AGTCGACGGT GCTGGCGGAC AACGGCGAGA TCATCGTGCT CGGCGGGTTG
ATGCAGGATA ACTACCAGGT ATCGAATACG AAGGTGCCGC TCCTCGGCGA CATTCCGTGG
ATCGGCCAGC TGTTCCGCTC CGAGGGCAAG ACGCGCCAGA AGACGAACCT GATGGTGTTC
CTGCGCCCCG TGATCATCAA CGACCGCGAG ACCGCGCAGG CGGTGACCTC GAACCGCTAC
GACTACATCC AGGGCGTGAC GGGCGCGTAC AAGTCGGACA ACAACGTCAT TCGCGACAAG
GATGACCCGA TCGTCCCGCC GATGCCGCTC GGCCCGAGCC AGGGCGGCTC GCCCGCGATG
AACCTGTTCG ACCTCGACAA GATGCGGCGC CAGCAGCTCG CTCCGCCCGC GCCCGCCAGC
GCGCCGGCGG CGGCGAGCGA CGCCGGCACC GCGTCGCCGG GAGCCCGTCC GTGA
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| Protein sequence | MTRTRFALRR VATALVVAGI VAAQAAHAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV
KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP
QARGDQVVTQ VFELRNESAN NLLPVLRPLI SPNNTITAYP ANNTIVVTDY ADNVRRIAQI
IAGVDSAAGS QVAVVPLKNA NAIDIAAQLT KLLDPGAIGN TDATLKVTVQ ADPRTNALLL
RASNAQRLAA AKKIAQQLDA PSGVPGNMHV VPLRNAEAVK LAKTLRGMLG KGGGESGSSA
SSNDANAFNQ GGSQSGSNFS TGASGTPPLP SGLSSNSSGG AGGTTGGGGL GNAGLLGGDK
DKGDDNQPGG MIQADAASNS LIITASDPVY RNLRAVIDQL DARRAQVYIE ALVVELQATT
SANLGIQWQV ANNALYAGTN LVTGQTNLGN SIVNLTAGAV TNPGGTLGSL GSITNGLNIG
WLHNMFGVQG LGALLQFFAG SSDANVLSTP NLVTLDNEEA KIVVGQNVPI PTGSYSNLTS
GTTANAFNTY DRRDVGLTLH VKPQITEGGI LKLQLYTEDS AVVPGTNTTS ANSPGPTFTK
RSIQSTVLAD NGEIIVLGGL MQDNYQVSNT KVPLLGDIPW IGQLFRSEGK TRQKTNLMVF
LRPVIINDRE TAQAVTSNRY DYIQGVTGAY KSDNNVIRDK DDPIVPPMPL GPSQGGSPAM
NLFDLDKMRR QQLAPPAPAS APAAASDAGT ASPGARP
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