| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2171 |
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| Symbol | |
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| ID | 4909296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 2006033 |
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| End bp | 2007160 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640125925 |
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| Product | PUA domain-containing protein |
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| Protein accession | YP_001057052 |
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| Protein GI | 126460774 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0144] tRNA and rRNA cytosine-C5-methylases |
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| TIGRFAM ID | [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTTT ATGGAATAGA AATCGACTAT GATTTATATA AACATTTTCT GGAATTTTTG
ACAGACGGCG AAATAGATGC ACTCTTTAAA GCAATAACAA CGCCTCCGCC GCGCTACTAC
GTAAGAGTAA ACACGTCACG CATATCTGCC AATGAGCTAG TTAGGCGGTT AAATGCAAGA
GGGGTGCCGG CGTATAGGGA CGAGCACATA GAAGAGGCCA TTTGGCTACC TGTACAAGGC
CCCTTTCGAG TGCCAACGGC GAGGAAGATA GTTGTGGTAG ATAAAAAGGC GGCGGAGAGC
GTAATGGTGG GCGCAGACGT CTACGCCCCC GGAGTTATAA AGACAGAGCG AGTAGAGGTG
GGAGACGAGG TCAACGTGGT GGCGGACAAC GGCGTAGTAG TTGCGTTTGG TGTTGCTGTT
GCAAACAGCG ACGAGGTTTT AAAGACGCGG AGGGGGCTTT TCATAAAAGT AGAGAAGTCT
CTCTACAAGG CGCCAAAGAT AAGAGACTTG CCAGAATACG CCGAGGGGCT AATATACAGT
CAAAGCTTAC CCGCCATAGC TGTGGGACAT GTAGCAAAGC GCCTCGGAGT TGAAAAAGCA
GTCGACTTAA ACGCGGCCCC CGGAGGCAAG TGCACACACT TGGCTCAACT AGGCATGAGA
GTCTTTGCCG TAGACCGCTC CTGGTCCAAG ATATCCCGTC TCAGAGAAGA ACTCAAGCGC
CTCGGTTTAG AAGCCCAAGT AGATGTGTTA CTCCACGACA GTAGATACCT CGATAGAGAC
TTCCCACGGC TAAGGGCAGG CCTAGCGCTG GTGGACCCGC CTTGCACAGA CATAGGCGTA
CGACCAAAGA TATACCACCG AGTCACATAC AAGGCAGCAA AGACTCTGGC GCAGTACCAA
CTCCAGTTTC TAAAAACCGC CCTCAAAATA GCGGACTATG TCATATACTC AACCTGCACG
CTCACCTATG TGGAAAACGA AGAGGTGGTA CTGAAATCCA GGGCACAGAC GCTCCACCTG
GATCTCCCAA TAGGCGCTCC GGGGTGGGGC TGTGAGACTT GTAGACGTTT TCTACCGCAT
ATCCACAACA CCCCTGGCTT TTTCCTGGCC CTGCTATCAA AGGGCTAG
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| Protein sequence | MNFYGIEIDY DLYKHFLEFL TDGEIDALFK AITTPPPRYY VRVNTSRISA NELVRRLNAR
GVPAYRDEHI EEAIWLPVQG PFRVPTARKI VVVDKKAAES VMVGADVYAP GVIKTERVEV
GDEVNVVADN GVVVAFGVAV ANSDEVLKTR RGLFIKVEKS LYKAPKIRDL PEYAEGLIYS
QSLPAIAVGH VAKRLGVEKA VDLNAAPGGK CTHLAQLGMR VFAVDRSWSK ISRLREELKR
LGLEAQVDVL LHDSRYLDRD FPRLRAGLAL VDPPCTDIGV RPKIYHRVTY KAAKTLAQYQ
LQFLKTALKI ADYVIYSTCT LTYVENEEVV LKSRAQTLHL DLPIGAPGWG CETCRRFLPH
IHNTPGFFLA LLSKG
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