Gene Pcal_2169 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2169 
Symbol 
ID4909307 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp2005068 
End bp2005742 
Gene Length675 bp 
Protein Length224 aa 
Translation table11 
GC content51% 
IMG OID640125923 
ProductAMMECR1 domain-containing protein 
Protein accessionYP_001057050 
Protein GI126460772 
COG category[S] Function unknown 
COG ID[COG2078] Uncharacterized conserved protein 
TIGRFAM ID[TIGR00296] uncharacterized protein, PH0010 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATGT TTAAGCCATA TTCTCTAGTA GAGGGCGCAT ACCTCGTGAA ACTCGCAAGA 
GCCGCGGTAG AGCACTACCT CAAAACAGGC AGTATCCTAG TGCCAGAAAA CCCTCCGGAC 
AGACTGCTCC AAGACAACTA CGGCGTATTT ACAACAATTG AAACTCTGAA AGGAGATAAG 
TACGAGCTAA GAGGTTGCAT AGGCTACCCC GAGGGCTATA AAAACACACT ATATGCAACT 
ATCCTCAGCG CAATAGGAGC GTGTTGCCAA GACCCACGAT TTCCAGCCAT GAGGGCAGAG 
GAGCTTTCCC AGGTAGTCTT TGAAGTGTCT ATACTGAGCC CACTCACGCT CCTAAAGCCC 
GACCCTAGGA AATACTTAGA ACAAGTCAAA GTAGGCGTCC ACGGACTAGT CGTCAGGAGA 
GGGCCCTATG CAGGTCTCCT ACTGCCCCAA GTGGCAGTTG AGGAGTGTTG GAGCCCCGAG 
GACTTTCTAA CGCACGTATG TATAAAGGCT TGGCTACCCG GAGACTGTTG GCTCGATAGA 
CGGACCAAGA TATATGTATA CGAGGCCCAA ATCTTCAGAG AAGTGTCTCT ACAAGGCGAC 
GTAGTAGAGC GCGACTTAGC GGCCGAGGTC TCCGCTAGAT GTAGTCAAGG AACTCAAAGA 
GAAAACGCGC GGTGA
 
Protein sequence
MSMFKPYSLV EGAYLVKLAR AAVEHYLKTG SILVPENPPD RLLQDNYGVF TTIETLKGDK 
YELRGCIGYP EGYKNTLYAT ILSAIGACCQ DPRFPAMRAE ELSQVVFEVS ILSPLTLLKP 
DPRKYLEQVK VGVHGLVVRR GPYAGLLLPQ VAVEECWSPE DFLTHVCIKA WLPGDCWLDR 
RTKIYVYEAQ IFREVSLQGD VVERDLAAEV SARCSQGTQR ENAR