Gene Pcal_2155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2155 
Symbol 
ID4908456 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1992929 
End bp1993537 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content50% 
IMG OID640125909 
Productorotidine-5'-phosphate decarboxylase 
Protein accessionYP_001057036 
Protein GI126460758 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0284] Orotidine-5'-phosphate decarboxylase 
TIGRFAM ID[TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAGCGCG TGCATCCGGT AATAGTGGCG TTAGATACCG ACGTGTTAAA GGCGCTGGAT 
GTGGCAAAAG CCCTAAGAGA CGAGGTGGCT GGATTCAAGG TGGGGTGGGA CCTCATACTC 
GAGGGCGGCA TATCTATTGT GAGCGAGATT TCCAGATATG GAAGTGTTGT AGTAGATGTA 
AAGATCGCAG ATATTCCATA TATATCAAGT AGATTAATAG ATAAGTTTAT AAGGAGGGGC 
GCTTGCTGTG TAATTGTACA CGGCTTTCTA TACCCCTCGA ACGTCAACGG CAAACATGTA 
TACGTCTTGG CAAAGATGAC TGTTCCCACT ATGTACGACT ATGTATGGGA AAAGCTACTA 
GACGAGGTGG AGGCGGTGAG GGGGTTTGTA CTGCCGGGCA ACCAGCCTGA GGCTATTAAA 
AAGGCGCGTG AAAAACTGGG ATGTAAATAC CGCATAATAG CCCCCGGCAT TGGCGCACAG 
GGGGGGAGGC CTGGAGAGGC CATTGAGGCA GGCGCCGATT TTGAAATAGT GGGCAGATAT 
CTGTTAGAAG ACCTCTCTAG AGTTTCCCAC TGGGACAGGC TGAAGCCCAC GTGTTTTACA 
TCTCCCTAG
 
Protein sequence
MERVHPVIVA LDTDVLKALD VAKALRDEVA GFKVGWDLIL EGGISIVSEI SRYGSVVVDV 
KIADIPYISS RLIDKFIRRG ACCVIVHGFL YPSNVNGKHV YVLAKMTVPT MYDYVWEKLL 
DEVEAVRGFV LPGNQPEAIK KAREKLGCKY RIIAPGIGAQ GGRPGEAIEA GADFEIVGRY 
LLEDLSRVSH WDRLKPTCFT SP