| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2146 |
|---|
| Symbol | |
|---|
| ID | 4908707 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1983808 |
|---|
| End bp | 1984965 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640125900 |
|---|
| Product | small GTP-binding protein |
|---|
| Protein accession | YP_001057027 |
|---|
| Protein GI | 126460749 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2262] GTPases |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03156] GTP-binding protein HflX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGAGTA GGGCGCTTCT CGCCTACGTC GGCCCCAAGG AGCAGGCCCT GAGCAATAAA
ATTGAGGAAT TCGTCTCGCT GGCGGAGGCC GCGGGCTTTG ACGTTGTCGA CGTTGTTACA
CAGTTTGGCA GACCCGACAC CAGGTTTTAC CTAGGCACAG GCAAAGCGCG GGAGGTGGCG
CTCCGCGACT TTGACATATT TGTCGCGTAC CACACTTTGA CTCCCCTACA AGTTTTCAAC
TTGGAAAAAT TGTTTAAAAG GAGGGTCTTG GATAGAGTTT ACTTAATACT TACAATTTTT
GAAAAGAGGG CCGGAAGCAC AGAGTCTAAG TTGCAGATTG AACTTGCACG GCTTAGGTAC
GAGCTCCCGA GAGTAAAGGA ATATCTGCGG AGAGCAAAGA TGGGCGAGCA GCTGGGGTTT
ATGGGCGCTG GCGAGTACAT AATTGACGCC TATTACCGCC ACATGGTCAA ACGCATGGCC
ACGATAAAGA GAAAGCTTGA GGAAGTTAGG AAAAACAGGG CCATGCACAT ACAGCGGAGG
AAGAGGTCGG GCGTGCCAGA GGTGGTCATA ACCGGCTACA CAAGTGCGGG GAAGACTACC
CTCTTCAATA GGTTGACCAA CGAGGACAAG CTAGTAGACG GCAGGCCCTT CGCGACGCTG
GAGACCTACA GCAGGGCCCT AGACTTATGG GGCAAGAGAG TTGTGATCAC AGACACAATA
GGGTTCATAG ACGACTTGCC CCCCTTCCTA ATAGAGTCGT TTCACTCGAC TCTCCAAGAG
GTCACAGAGG CAGACGTGGT GCTACTAGTC GTAGACGGGT CCGATCCGCC TGGCGAGCTT
AGCAGAAAGC TTGAGACATC TATGGAGACC CTGGGAGAGG TAGGCGTCTC AAGGGACAGA
GTGATCCCGG TTGTAAATAA AGTGGACAGG ATAGGCATAG GGCGTGTCAG AGAGCTGAGG
TCTGTGTTAG CGAAGTACTT CACTTGGTTT ATCCCCATAT CAGCGCTTAC GGGCTTCGGC
ATTGAGGCGC TAAAGGCCGT CCTATTCTTC AAGGTGCCGG GCTACATTTT GACAAAGACA
CAGGACAGAG AGGCAAGGGG GCTACGTGTC GGAGATGTAG TGTTCGTGCC AATCCCCGAA
GACGCGGGGA GGTTCTAA
|
|---|
| Protein sequence | MKSRALLAYV GPKEQALSNK IEEFVSLAEA AGFDVVDVVT QFGRPDTRFY LGTGKAREVA
LRDFDIFVAY HTLTPLQVFN LEKLFKRRVL DRVYLILTIF EKRAGSTESK LQIELARLRY
ELPRVKEYLR RAKMGEQLGF MGAGEYIIDA YYRHMVKRMA TIKRKLEEVR KNRAMHIQRR
KRSGVPEVVI TGYTSAGKTT LFNRLTNEDK LVDGRPFATL ETYSRALDLW GKRVVITDTI
GFIDDLPPFL IESFHSTLQE VTEADVVLLV VDGSDPPGEL SRKLETSMET LGEVGVSRDR
VIPVVNKVDR IGIGRVRELR SVLAKYFTWF IPISALTGFG IEALKAVLFF KVPGYILTKT
QDREARGLRV GDVVFVPIPE DAGRF
|
|---|
| |