| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2141 |
|---|
| Symbol | |
|---|
| ID | 4909532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1981999 |
|---|
| End bp | 1982241 |
|---|
| Gene Length | 243 bp |
|---|
| Protein Length | 80 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640125895 |
|---|
| Product | LSM family small nuclear ribonucleoprotein |
|---|
| Protein accession | YP_001057022 |
|---|
| Protein GI | 126460744 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1958] Small nuclear ribonucleoprotein (snRNP) homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACGG ATTTATCCAA GTGCTTCGCC ACGCTGGGAG CCACTCTGCA AGACTCCATT
GGGAAACAAG TGTTGGTAAA ACTCCGCGAC AGCCACGAGA TCAGGGGCAT ACTGAAGGCC
TTTGACCAAC ATGTAAACCT CCTCCTAGAC GACGCCGAGG AGATCATAGA CGGCAATGTG
TATAAACGCG GCACCATAGT GGTGAGAGGA GAAAACGTCT TGTTTATTTC GCCTGTGTCA
TGA
|
|---|
| Protein sequence | MATDLSKCFA TLGATLQDSI GKQVLVKLRD SHEIRGILKA FDQHVNLLLD DAEEIIDGNV
YKRGTIVVRG ENVLFISPVS
|
|---|
| |