| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2139 |
|---|
| Symbol | |
|---|
| ID | 4908347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1981203 |
|---|
| End bp | 1981796 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640125893 |
|---|
| Product | multiple antibiotic resistance (MarC)-related protein |
|---|
| Protein accession | YP_001057020 |
|---|
| Protein GI | 126460742 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2095] Multiple antibiotic transporter |
|---|
| TIGRFAM ID | [TIGR00427] membrane protein, MarC family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCTCC ACAGCTTAGC CCTCTCAATA CTTGTGTTAT ATATCGTGGT TGACCCAGTT
GGGAATATTC CACTTTTCAT GGCTGTGACG AGTAGAATCG GGGAGGGGGC GCGTAGGAGA
GTGCTTTCTC TCTCCGTGGT AGTGGCCTCC CTAATTTTGG CCTTCTTCGC CTTAGTCGGC
GTAGAATTTT TCGCCTACTT CGGCGTGGGT CTGGGGGACT TCATGGTGGC GAGTGGCCTG
GTACTCGCGG CCTTTTCTCT TCTTTACCTG TTGAGGCCTT ATGAGGCCCC AGTGTCGGAG
GGAGTTGAGG TGGCAGTTGT GCCTCTAGCC GTGCCGTATC TATCAGGCCC TGCCTCTATC
TCGTACGTGT TAGTGCTGTC GAATCAGTAT GGCAAAGTCT TCGCTCTAGT TGTAATAGTG
GCCGTGGCGG CGCTTACATA CCTGACGCTG TCTGCGTCGA GGTATGTGAT GAAGGCCTTG
GGCGTGATTG GGATAAGAGT CGTTGAAAAG ATCATGCTCG TAGTAAGCGT GGCTATAGGG
GTTTCCCTTG TGCGAAAAGG CGTGGCGCTG TGGCTCAGCG AAGGCGCCGT ATAG
|
|---|
| Protein sequence | MDLHSLALSI LVLYIVVDPV GNIPLFMAVT SRIGEGARRR VLSLSVVVAS LILAFFALVG
VEFFAYFGVG LGDFMVASGL VLAAFSLLYL LRPYEAPVSE GVEVAVVPLA VPYLSGPASI
SYVLVLSNQY GKVFALVVIV AVAALTYLTL SASRYVMKAL GVIGIRVVEK IMLVVSVAIG
VSLVRKGVAL WLSEGAV
|
|---|
| |