| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2117 |
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| Symbol | |
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| ID | 4908459 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1960730 |
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| End bp | 1961770 |
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| Gene Length | 1041 bp |
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| Protein Length | 346 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640125871 |
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| Product | flap endonuclease-1 |
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| Protein accession | YP_001056998 |
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| Protein GI | 126460720 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) |
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| TIGRFAM ID | [TIGR03674] flap structure-specific endonuclease |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGTTA CTGAGCTAGG CAAACTCATT GGAAAAGAGG CTAGGCGTGA GATAAAGCTG
GAAAGTTTGG CCGGCAAGTG CGTTGCCCTC GACGCCTACA ACGCGCTTTA CCAATTTCTC
GCGTCTATCC GCCAGCCCGA TGGAACTCCG CTTATGGACC GCGCGGGGCG TATAACCAGC
CACCTCTCCG GCCTATTTTA CCGCACGATA AACCTACTAG AGGCGGGGGT TAAGCCTGTG
TATGTATTCG ATGGGAAGCC CCCCGAATTT AAGCTCCTAG AGATTGAACA GCGGAAGAAG
GCCAAGGAGA AGGCTTTGGA AGAGGTGGAG AAGGCAATAA GGGAGGGGAG GAGGGAAGAC
GTGGCCAAGT ACGCAAAGAG GGCGATCTTT TTGACGAGTG AGATGGTGGA AGATGCAAAG
AAGTTGTTGA CCTACATGGG TATCCCGTGG GTGCAAGCCC CAAGCGAGGG CGAGGCGCAG
GCCGCCCACA TGGCCAAGAG GGGGCACTGC TGGGCCGTGG GTAGCCAAGA CTACGACTCT
CTGCTTTTCG GTTCGCCCCG CCTAGTTAGA AACCTAGCCG TGTCTCCCAA GAGAAAGGTA
GGGGAGGAGG TGGTGGAGCT CTCGCCAGAG TTAATAGAGC TAGACGCTGT GCTTAAATCG
CTCAAGCTGA AGGGCAGGGA GCAGTTAATC GACTTGGCGA TACTCTTGGG CACAGACTAC
AACCCAGAGG GGGTGCCGGG TGTGGGGCCT CAGAAGGCGC TCAAGCTCAT ATGGGAGTTC
GGGAGCCTAG AGAAGCTCCT CCAGACCGTG CTAAAGGGCG TGCAATTCCC CGTAGACCCG
CTTAAGATTA GGGAGTTCTT CCTAAACCCG CCTGTCACAG ATCAGTACAG CACAGAGCTC
TCTACCCCCG ACGAGAGAAA GATCGTGGAA CTGCTCGTCG AAGAGCACGA CTTCTCACAG
GAGAGAGTGG CCAAGGCCTT GGAAAGATTG GCTAAGGCCA GGGGGAAGGT TAAGACAACG
TCTCTCGACG CGTTTTTCTA A
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| Protein sequence | MGVTELGKLI GKEARREIKL ESLAGKCVAL DAYNALYQFL ASIRQPDGTP LMDRAGRITS
HLSGLFYRTI NLLEAGVKPV YVFDGKPPEF KLLEIEQRKK AKEKALEEVE KAIREGRRED
VAKYAKRAIF LTSEMVEDAK KLLTYMGIPW VQAPSEGEAQ AAHMAKRGHC WAVGSQDYDS
LLFGSPRLVR NLAVSPKRKV GEEVVELSPE LIELDAVLKS LKLKGREQLI DLAILLGTDY
NPEGVPGVGP QKALKLIWEF GSLEKLLQTV LKGVQFPVDP LKIREFFLNP PVTDQYSTEL
STPDERKIVE LLVEEHDFSQ ERVAKALERL AKARGKVKTT SLDAFF
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