Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_2115 |
Symbol | |
ID | 4909382 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1958296 |
End bp | 1960491 |
Gene Length | 2196 bp |
Protein Length | 731 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640125869 |
Product | AAA family ATPase, CDC48 subfamily protein |
Protein accession | YP_001056996 |
Protein GI | 126460718 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0464] ATPases of the AAA+ class |
TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family [TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTGAGT GGATTGAATT AAGAGTTCTC GAGAGCAAGG CACGGGACGC TAATCGTCCA GTGGTGAGGA TAGACCCCGA GGTTATGGAG AGGGCGGGGA TAATGGTGGG CGACGTGGTT GAAATCGTTG GGAGGAGGAG GACTGCCGCT AAGGTGTGGA ACGGCCTTCC CGAGGATAGG GGCAAGGGCG TAATTAGGAT GAACAGCATA CTTAGGAAGA ACGCCGACGT GGCTCTCAAC GAGACTGTAA GAGTGAGAAG GGTCGAGCCA AAGCCCGCGG CGTTTGTAAA GCTTGCACCC GTGTCTATGA CCATCGCCGT TGATGCAAAC TTCCTGCAGT ACATTAAGCA GAGGTTGAGG GAGTACGTGG TAGTTGAGGG CGACATGTTG CAAATCCACG TGCTTAGCCA GCCTCTCACA TTCCAAGTAA TTCAGACCAA GCCCTCCAAC TCCATTGTCA TAATAAACGA CGACACGCAG ATTCAGATAT TTGAAAAACC GGTGTCAGGC GTCAAGATCC CGCACGTGAC TTGGGAGGAC ATCGGCGATT TGGAGGATGC TAAGCAGAAG ATTAGGGAGC TTGTGGAGCT TCCTCTTCGG CATCCTGAGC TTTTTAAGCA CTTGGGCATA GAGCCGCCTA AGGGCATTCT GCTTATTGGG CCTCCTGGCA CTGGGAAGAC GCTTTTGGCC AAGGCCGTGG CCAACGAGGC TAACGCCTAC TTCGTGGCCA TTAACGGGCC TGAGATCATG TCTAAGTACT ACGGCGAGTC TGAGGCTAGG CTGAGAGAGA TATTTGAGGA GGCTAAGAAG AACGCCCCCG CAATCATCTT CATAGACGAG ATCGACGCCA TAGCGCCCAA GAGAGAGGAG GTGACCGGCG AAGTGGAGAA GAGAGTAGTG GCACAGCTCC TCACCCTAAT GGACGGACTA CAAGAAAGAG GACAGGTAAT AGTCATAGGA GCCACAAACC GCCCAGACGC AGTAGACCCA GCGTTGAGAA GGCCGGGAAG ATTCGACAGA GAGATCTGGA TTAATCCTCC CGACTTCAAG GGCCGGTATG AGATACTTGT TATACATACC CGGAACATGC CTCTGGGGCC CGACGTCGAT TTGAGAAAAC TCGCCGAGAT TACACACGGC TTCACTGGGG CCGACTTAGC CGCCTTGGCG AGGGAGGCGG CTATGAGCGC GTTGAGGAGG GCTATTCAGA GCGGGCTTAT TGACCTGAAC CAACCCTCTA TACCCCCCGA GGTGTTTGAG AAAATCAAGG TCACAATGGC CGACTTCATG GGCGCGTTGC GGGAGATTAT CCCCTCTGCC CTCAGAGAGG TGCACATAGA GGTGCCGCGG GTCCGCTGGG ACGACATAGG GGGCCTTGAA AATGTAAAAC AGGAGCTGAG GGAGGCCGTG GAGTGGCCTC TTAAGTACCC CGACCGCTTT AAGAAGTTCG GCCTGAGGGC CCCCAAGGGC ATACTGTTGT TCGGCCCGCC AGGCACTGGG AAGACGCTTT TAGCCAAGGC CGTTGCCACC GAGTCTGGGG CCAACTTCGT GGCAGTTAGG GGGCCGGAGA TCTTCTCCAA GTGGGTGGGC GAGTCTGAGA AAATGGTCAG AGAGATCTTT AGAAAGGCCC GTATGGCGGC TCCGGCCGTT ATATTCATAG ACGAGATTGA TGCGCTGGCC ACGGCTAGGG GGCTTGGCGG GGACTCTCTC GTAAGTGAGC GGGTTGTTGC ACAACTCTTG GCAGAGATGG ACGGCATAAA GGCCCTGGAG AACGTGGTGG TAATAGCGGC CACAAATCGC CCCGACTTGG TAGACCCCGC GTTGCTGAGG CCGGGCAGAT TTGACAGAAT TATATACGTG CCGCCCCCCG ACTTTAAGGC CAGGCTTGAG ATCTTGCTCA TACACACCAG GGCTACCCCC TTGGCCAAAG ATGTGGACTT AGAGGAGATA GCTAGGAGGA CTGAGGGCTA CTCAGGCGCA GATTTAGAGC TCTTGGTAAG AGAGGCGACG TTCCTCGCGC TTCGCGAAAA CATAGACACA AAGGAGGTCT CCATGCGCCA CTTCGAGGAG GCGCTTAAGA AAGTTAGACC CTCTGTGACT CCCGACATGT TGAAGTTCTA CGAGTCTTGG CTTGAGCGCG CCAGACAGTT AACTACTCCG ACCAAGGCCA GGGCAACGCC TCCGCTGTAC CTATGA
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Protein sequence | MSEWIELRVL ESKARDANRP VVRIDPEVME RAGIMVGDVV EIVGRRRTAA KVWNGLPEDR GKGVIRMNSI LRKNADVALN ETVRVRRVEP KPAAFVKLAP VSMTIAVDAN FLQYIKQRLR EYVVVEGDML QIHVLSQPLT FQVIQTKPSN SIVIINDDTQ IQIFEKPVSG VKIPHVTWED IGDLEDAKQK IRELVELPLR HPELFKHLGI EPPKGILLIG PPGTGKTLLA KAVANEANAY FVAINGPEIM SKYYGESEAR LREIFEEAKK NAPAIIFIDE IDAIAPKREE VTGEVEKRVV AQLLTLMDGL QERGQVIVIG ATNRPDAVDP ALRRPGRFDR EIWINPPDFK GRYEILVIHT RNMPLGPDVD LRKLAEITHG FTGADLAALA REAAMSALRR AIQSGLIDLN QPSIPPEVFE KIKVTMADFM GALREIIPSA LREVHIEVPR VRWDDIGGLE NVKQELREAV EWPLKYPDRF KKFGLRAPKG ILLFGPPGTG KTLLAKAVAT ESGANFVAVR GPEIFSKWVG ESEKMVREIF RKARMAAPAV IFIDEIDALA TARGLGGDSL VSERVVAQLL AEMDGIKALE NVVVIAATNR PDLVDPALLR PGRFDRIIYV PPPDFKARLE ILLIHTRATP LAKDVDLEEI ARRTEGYSGA DLELLVREAT FLALRENIDT KEVSMRHFEE ALKKVRPSVT PDMLKFYESW LERARQLTTP TKARATPPLY L
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