Gene Pcal_2112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2112 
Symbol 
ID4909438 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1955976 
End bp1957397 
Gene Length1422 bp 
Protein Length473 aa 
Translation table11 
GC content51% 
IMG OID640125865 
Productextracellular solute-binding protein 
Protein accessionYP_001056993 
Protein GI126460715 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGACAT CCCAGCTTCT TGCAATAGTT GTGTTAGTCG TTGTTGTGGG CGTCGTTGCA 
TATATTCTGG GCACCATGCA ACAAGCGCCG CAGGTTACAC AGACGGCTCC CACACCCCCC
GCTCAGACGA CGGCGCAGGT AAAGAAAATC TCATTCTACA CCTGGTGGGC TGGCCTTGAA
AGATTTGCAA TAGATGCAGT TATTGGGAAC TTTACAAAGA AGACGGGTAT TCAGGTAGAG
AAAACCGCCG TGCCCGGCGG CGCTGGTGTA AACGCCAAAT TTGCAATTTT GGCATTAATG
CAGGCGGGGA ATCCGCCTGC GGCGTTTCAA GTGCACTGTG GGCCTGAGAT TCTGAGCTAT
ATCTATGTGG CTCCGAAGGG GGAGGCCAGC TTTGTAGAGT TGAGCAGTGT GGCAAAGGAA
ATAGATATGA CGACTCAAGC GCCTGACGTA CTTTCGGCGT GCTCCCTGAA CGGGAAAGTA
TACGCATTGC CAGTTAATAT ACACAGGGCA AATCTCATAT TTATAAATAA ACAGGTTTTA
GACAAAATTG GTGGTTCTGT TCCCAAGAGT TTAGACGACT TAGTTGCCCT ATGTAATAAG
GCAACCTCCA TGGGCATCCC ATGCCTACTG CAAGCCGGCG CCGACCAGTT CACAATACTG
CACTTATGGG AGCAAGTGTT TTTGGCCGTA GCCGGGCCGC AGAAGTTCAT AATATTTACG
TATGGAACAC TGCCCCCAGA CGACCCCTCT CTACGCCAGG CCACAGAGGT GTTCTTGACG
CTTTCGAAGA CATTTCCTGC TAATTGGCCT TCTCTGGATT GGACGGGGGC TGTGGCAGAC
TTAGTTGCTG GAAAAGGCTT GGCGCATGTA GATGGCGACT GGGTAGTGGG GTTGATATAC
AACGTCTATC CACAGGTGAA GATGTGCCCC TACACTGCTG TCACGCCAGA CTGCAATATA
ATAGTGGCTC CATTCCCTGG AACTCAAGGT ATTTACAACC TAGTTATAGA CGCGGTGGCA
GTACCCGCTG GGTCTCCCAC TACGCAGATG GGGATAGAAT TTGTGAAATA CTTCGCGGGA
CCGGAGGGGC AGTCGATTTT CAACCCGCTT AAGGGCTCCA TAGCGGTTTA TAAGAACATA
GACCCAGCCA TATATCCCAC GCCTATACAG AGGTGGGAGG TGGAGGAGTA TAGGAATGCC
AAGGCCTATG TATTTAGCCT AACACACGGC GCATTATTCT CTGACGTGTG GCAGTCATTG
CTACAACAGT CCATTGTACT CGTACAAACG GGTCGGACCG ACTTATGGTA CAATACGTTG
GCCAGCGCCC TCAATACCGA GAGATCCCTC TGGAAGGATA CTTGGTACAT GGGAGCGCCT
GGGAAACCCT TCGGCGGCTA TCAGCCACCT TGGGTTAAAT GA
 
Protein sequence
MKTSQLLAIV VLVVVVGVVA YILGTMQQAP QVTQTAPTPP AQTTAQVKKI SFYTWWAGLE 
RFAIDAVIGN FTKKTGIQVE KTAVPGGAGV NAKFAILALM QAGNPPAAFQ VHCGPEILSY
IYVAPKGEAS FVELSSVAKE IDMTTQAPDV LSACSLNGKV YALPVNIHRA NLIFINKQVL
DKIGGSVPKS LDDLVALCNK ATSMGIPCLL QAGADQFTIL HLWEQVFLAV AGPQKFIIFT
YGTLPPDDPS LRQATEVFLT LSKTFPANWP SLDWTGAVAD LVAGKGLAHV DGDWVVGLIY
NVYPQVKMCP YTAVTPDCNI IVAPFPGTQG IYNLVIDAVA VPAGSPTTQM GIEFVKYFAG
PEGQSIFNPL KGSIAVYKNI DPAIYPTPIQ RWEVEEYRNA KAYVFSLTHG ALFSDVWQSL
LQQSIVLVQT GRTDLWYNTL ASALNTERSL WKDTWYMGAP GKPFGGYQPP WVK