| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2093 |
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| Symbol | |
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| ID | 4910198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1943049 |
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| End bp | 1944197 |
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| Gene Length | 1149 bp |
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| Protein Length | 382 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640125846 |
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| Product | DNA-directed RNA polymerase subunit A'' |
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| Protein accession | YP_001056974 |
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| Protein GI | 126460696 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02389] DNA-directed RNA polymerase, subunit A'' |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGTGCGG TAATCTCTAA GCAAGAGCTA CTAGCAAAGA TCAGGAGCAT ATTACCACAG
CCAATATATA AAGAGCTGGA AGCGGCGGTT AGCGAATTAG ACGAGGAGCG TGCCACTAAG
TTGATATACC GCGTCCTAAG GCTTTACCTC GCGTCTCTGA TAGACCCCGG GGAGGCCATA
GGAATCGTTA CGGCGCAGTC CATAGGCGAG CCAGGCACGC AGATGATTCT GCGCTCTTTC
CACTACGCTG GTCTTAGGGA ATTCTCAATG GCGAGGGGTC TGCCCCGCCT AATAGAGGTC
GTCGACGCCA GAAGACACCC ATCGACGCCT CTGATGTTTG TATACTTAAA GCCTCCCTAC
AATAAGACGC GGGAGGCCGC AGAAAAAGTT GCCAAGCAAA TACAACAAGT AACTCTTGAG
ATGTTGACCA AGGAGATTGA TGTAGACTAT GTCTCAGGTA CTATTAGCCT AGTTCTCGAC
CAAGAACAGT TAAGGTACAG AGGGCTGTCT TTAAAAGATG TGGAAAAAAT TGTGTCAAAG
GTCAGGGGGA AGGATTTGAG CATCTCCATG AAGGGGAATG TAATAGTTGC CTCTCTTGCG
GTTCCAGATA TTTTAAAGAT TAAGAAAGCT AGAGATAAAT TGCTACAAGT AAAGATATCT
GGGATAAAGG GTATTAAAAA AGTAGTATTG CAGTACGATT CTAAGAATGA CGAGTGGTAT
ATAGTGACTG AGGGCACAAA TCTTGAGGCT GTGCTACAGT TGGAGGAGGT GGACAAAGCG
AGGACCTACA GCAACGACTT ACACGAGGTT GAGGAGGTCT TGGGCATAGA GGCGGCGAGG
ACGTTAATAG CACACGAGAT AAAACGTGTG TTGGACGAAC AGGGCCTTGA CGTAGATATA
CGCCACATGT ACCTAGTGGC AGATGCCATG ACTTGGTCTG GTAGAGTAAG GCCCATTGGC
CGCCACGGCG TCGTTGGAGC TAAGGAGTCT CCACTCGCCC GCGCGGCGTT TGAGGTAACT
GTTAAAACGT TGATAGAGGC CGCGGTTAGG GGGGAGGAGG AGCGCTTCAA AGGCGTAGTG
GAGAACATAA TTGCTGGAAA GCACGTGCCA ATAGGCACGG GGATCGTCAA GCTCTTAATG
CGATTTTGA
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| Protein sequence | MGAVISKQEL LAKIRSILPQ PIYKELEAAV SELDEERATK LIYRVLRLYL ASLIDPGEAI
GIVTAQSIGE PGTQMILRSF HYAGLREFSM ARGLPRLIEV VDARRHPSTP LMFVYLKPPY
NKTREAAEKV AKQIQQVTLE MLTKEIDVDY VSGTISLVLD QEQLRYRGLS LKDVEKIVSK
VRGKDLSISM KGNVIVASLA VPDILKIKKA RDKLLQVKIS GIKGIKKVVL QYDSKNDEWY
IVTEGTNLEA VLQLEEVDKA RTYSNDLHEV EEVLGIEAAR TLIAHEIKRV LDEQGLDVDI
RHMYLVADAM TWSGRVRPIG RHGVVGAKES PLARAAFEVT VKTLIEAAVR GEEERFKGVV
ENIIAGKHVP IGTGIVKLLM RF
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