Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_2092 |
Symbol | |
ID | 4910223 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1940407 |
End bp | 1943061 |
Gene Length | 2655 bp |
Protein Length | 884 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640125845 |
Product | DNA-directed RNA polymerase subunit A' |
Protein accession | YP_001056973 |
Protein GI | 126460695 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02390] DNA-directed RNA polymerase subunit A' |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCTTAA GGGAGGCCCT AGATAGCGTA CCTCGCAAAA TCATCAAGTC CATTAGGTTC GGGATCTTAA GCCCCGACAT GATTAGGAAA TATTCAGTGA TGGAGGTCAC CACGTCGGAG GTGTATGACG AGGGCGGGCT TCCCGTGAGG GGCGGCATTG CAGATAGGAG GCTTGGCGTG TCTGAGCCAG GCGCTAGGTG CGAGACCTGT GGTCAAACAC ATGACGTCTG CCCAGGCCAC TTTGGGCACA TAGAGCTGGT AAAGCCTGTG ATACATGTGG GCTATGCGAG GATTATCTAC GACGTGTTGA GGGCTACGTG CCCCAACTGT GGCAGAATAA TGCTCAAAGA CGAGGAGATA AAGAGGTACA AGGAGAGACT TGATAGACTT AAGGGCAGGT GGAGGTTGTT GGCTCAAAAC CTACAGGAGA AGATAAAGAA GAAGGCGGCG GAGCGGGCCA CATGTCCACA CTGTGGGTAT AAGAGGAACA AGGTGAGGTT TGAAAGGCCT TACTACTTCT ACGAAGAGAC GGAGAACGGC GCCTTGGTTA AGCTGGACCC GGAGACGCTC AGAGAGCGGC TCGCCAAGGT GCCAAATGAT GACTTAGAAC TTTTAGGCAT AAACCCAGTA GTGGCTAGGC CAGAGTGGGC TATACTCAAG GTACTGCCTG TGCCTCCGCC GCACGTGAGG CCGTCAATCC AGCTTGAAAC AGGCATAAGA TCTGAAGACG ACTTGACGCA CAAGCTTGTG GATATCATTA GGATGAATGA GAAGTTGAAA ATAGCCCTTG AGACAGGCGC CCCCACGAAC GTCGTGGACA ACTTGTGGGA CCTCCTCCAG TACCACGTGG CCACTTACTT TGACAACGAG CTCCCCGGCA TACCCGTCGC CAAACACAGA GGGGGGAGGC CGCTGAAGGG GATTGCCCAA AGGCTAAAGG GGAAGGAGGG GAGGTTCAGA GGGTCTCTCT CAAGCAAACG CGTTAACTTC TCCGCGAGGA CTGTCATAAG CCCCGACCCC CACATCAGCA TAAACGAAGT CGGCGTGCCC ATAGACATAG CCAAGGTCTT GACTGTGCCA GAGAGAGTCA CCACGTGGAA TATAGATGCA CTGCGTGAGT ACGTGCTCAG GGGTCCCGAG GCGTGGCCCG GGGCCAACTA CGTAATTACG CCAGAGGGGA GAAGGATAGA CTTGAGATAT GTGAAAGACC GGAGGGCGCT GGCGGAGAGG CTGGCGCCCG GCTGGATTGT GGAGCGACAC CTCGTAGACG GCGACATAGT GCTATTCAAC AGGCAGCCAA GTCTACACAG GGTGTCAATG ATGGGGCACT TGGTGAAGGT GTTGCCTGGG AGAACCTTTA GGCTTCACTT GGCCGTGTGT CCGCCCTACA ACGCCGATTT CGACGGAGAT GAGATGAATC TCCACGTCCC TCAGACAGAG GAGGCGAGGG CCGAGGCTAG GACTTTGATG TTGGTGGAGA AGCACATAAT AACGCCGCGC TACGGCGGCG CAATTATTGG CGCAAGACAA GACTACATAA TTGGCGCCTA CCTCTTGTCG CATAAGTCCA CGTTTCTCAC CAAGAAGGAG GTGGCGTACC TACTCGGGGC TGGAAAGTCC GCGGAGGATC CGCCGGAGCC GGCCATTTTA CACCCAGTAG AGCTGTGGAC TGGCAAACAG ATAATATCCC ACTTCCTTCC AAAAGACTTA AACTGGGTTC AGCCCACCGC GTTTAAGAGC AAGTGCCAAG ACGCATATAC CTGCGACGGC GACGAGTGGA TCATTGTGAT AAACGGCAAC TTGGTCAAAG GAGTTTTAGA CAAGAAGTCC ATAGGCGCCG AGCAAGTGGA CTCGCTGTGG CACCGCATTG CGCGCGACTA CCCGCCAGAG GTGGCTGGGA GGTGGCTCGA CTCATCTCTC AGACTCTTCC TCAGGTGGCT AGATTTACGC GGATTCACCT TCGGCATGGA CTCGGTGTAC CTACCTAAGG AGGCATACGA CGAACTGGAC AAGCTAATAG AGAGCGGCTT GAAGAAGGCC GATGAGCTAA TCCAAGAGTT TAAGAGCGGG AGGCTTGAGG CAATGCCGGG CTTCACAGTG GAGGAGACCT TTGAGAACAA GATTACAGAG GTGTTGTCGA GAGTCCGCGA AGACGCAGCA ACCGTTGTTG AGAAGTACAT CAGGAAAAAT AGCGAGGGCT ACCTAATGGC CAAGACGGGG GCACGCGGTA GCATTGTAAA CATCGTGCAA ATGGTGGCCA CCCTTGGCCA GCAGACTATA CGCGGCGAGC GTATAAGACG TGGATACCGA ACGAGGACTC TGCCCCACTT CCCTGTGGGA GACATAGGCG CCTACGTAGG CGGCTTTGTC AAAAGCTGTT TTAGGTGCGG CTTATCTCCA GTGGAGTACT TCTTCCACGC AGCGGCGGGG AGAGACGGGC TGATAGACAC TGCAGTACGC ACCGCGCAGT CGGGCTACAT GCAACGTAGA CTTATAAACG CGCTTCAAGA CGTCTACGTG GCCTACGACG GCACAGTGAG ATTCAGCGGG TCAACTTTGC TCCAAGTGTT GTACGGGGAA GACGGCGTCG ACGTCAGCAA GTCCGACCAC GGAAAAGTTG CTGACGTAAA ATCGCTTAGG CTATGGGTGC GGTAA
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Protein sequence | MSLREALDSV PRKIIKSIRF GILSPDMIRK YSVMEVTTSE VYDEGGLPVR GGIADRRLGV SEPGARCETC GQTHDVCPGH FGHIELVKPV IHVGYARIIY DVLRATCPNC GRIMLKDEEI KRYKERLDRL KGRWRLLAQN LQEKIKKKAA ERATCPHCGY KRNKVRFERP YYFYEETENG ALVKLDPETL RERLAKVPND DLELLGINPV VARPEWAILK VLPVPPPHVR PSIQLETGIR SEDDLTHKLV DIIRMNEKLK IALETGAPTN VVDNLWDLLQ YHVATYFDNE LPGIPVAKHR GGRPLKGIAQ RLKGKEGRFR GSLSSKRVNF SARTVISPDP HISINEVGVP IDIAKVLTVP ERVTTWNIDA LREYVLRGPE AWPGANYVIT PEGRRIDLRY VKDRRALAER LAPGWIVERH LVDGDIVLFN RQPSLHRVSM MGHLVKVLPG RTFRLHLAVC PPYNADFDGD EMNLHVPQTE EARAEARTLM LVEKHIITPR YGGAIIGARQ DYIIGAYLLS HKSTFLTKKE VAYLLGAGKS AEDPPEPAIL HPVELWTGKQ IISHFLPKDL NWVQPTAFKS KCQDAYTCDG DEWIIVINGN LVKGVLDKKS IGAEQVDSLW HRIARDYPPE VAGRWLDSSL RLFLRWLDLR GFTFGMDSVY LPKEAYDELD KLIESGLKKA DELIQEFKSG RLEAMPGFTV EETFENKITE VLSRVREDAA TVVEKYIRKN SEGYLMAKTG ARGSIVNIVQ MVATLGQQTI RGERIRRGYR TRTLPHFPVG DIGAYVGGFV KSCFRCGLSP VEYFFHAAAG RDGLIDTAVR TAQSGYMQRR LINALQDVYV AYDGTVRFSG STLLQVLYGE DGVDVSKSDH GKVADVKSLR LWVR
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