Gene Pcal_2092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2092 
Symbol 
ID4910223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1940407 
End bp1943061 
Gene Length2655 bp 
Protein Length884 aa 
Translation table11 
GC content55% 
IMG OID640125845 
ProductDNA-directed RNA polymerase subunit A' 
Protein accessionYP_001056973 
Protein GI126460695 
COG category[K] Transcription 
COG ID[COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit 
TIGRFAM ID[TIGR02390] DNA-directed RNA polymerase subunit A' 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCTTAA GGGAGGCCCT AGATAGCGTA CCTCGCAAAA TCATCAAGTC CATTAGGTTC 
GGGATCTTAA GCCCCGACAT GATTAGGAAA TATTCAGTGA TGGAGGTCAC CACGTCGGAG
GTGTATGACG AGGGCGGGCT TCCCGTGAGG GGCGGCATTG CAGATAGGAG GCTTGGCGTG
TCTGAGCCAG GCGCTAGGTG CGAGACCTGT GGTCAAACAC ATGACGTCTG CCCAGGCCAC
TTTGGGCACA TAGAGCTGGT AAAGCCTGTG ATACATGTGG GCTATGCGAG GATTATCTAC
GACGTGTTGA GGGCTACGTG CCCCAACTGT GGCAGAATAA TGCTCAAAGA CGAGGAGATA
AAGAGGTACA AGGAGAGACT TGATAGACTT AAGGGCAGGT GGAGGTTGTT GGCTCAAAAC
CTACAGGAGA AGATAAAGAA GAAGGCGGCG GAGCGGGCCA CATGTCCACA CTGTGGGTAT
AAGAGGAACA AGGTGAGGTT TGAAAGGCCT TACTACTTCT ACGAAGAGAC GGAGAACGGC
GCCTTGGTTA AGCTGGACCC GGAGACGCTC AGAGAGCGGC TCGCCAAGGT GCCAAATGAT
GACTTAGAAC TTTTAGGCAT AAACCCAGTA GTGGCTAGGC CAGAGTGGGC TATACTCAAG
GTACTGCCTG TGCCTCCGCC GCACGTGAGG CCGTCAATCC AGCTTGAAAC AGGCATAAGA
TCTGAAGACG ACTTGACGCA CAAGCTTGTG GATATCATTA GGATGAATGA GAAGTTGAAA
ATAGCCCTTG AGACAGGCGC CCCCACGAAC GTCGTGGACA ACTTGTGGGA CCTCCTCCAG
TACCACGTGG CCACTTACTT TGACAACGAG CTCCCCGGCA TACCCGTCGC CAAACACAGA
GGGGGGAGGC CGCTGAAGGG GATTGCCCAA AGGCTAAAGG GGAAGGAGGG GAGGTTCAGA
GGGTCTCTCT CAAGCAAACG CGTTAACTTC TCCGCGAGGA CTGTCATAAG CCCCGACCCC
CACATCAGCA TAAACGAAGT CGGCGTGCCC ATAGACATAG CCAAGGTCTT GACTGTGCCA
GAGAGAGTCA CCACGTGGAA TATAGATGCA CTGCGTGAGT ACGTGCTCAG GGGTCCCGAG
GCGTGGCCCG GGGCCAACTA CGTAATTACG CCAGAGGGGA GAAGGATAGA CTTGAGATAT
GTGAAAGACC GGAGGGCGCT GGCGGAGAGG CTGGCGCCCG GCTGGATTGT GGAGCGACAC
CTCGTAGACG GCGACATAGT GCTATTCAAC AGGCAGCCAA GTCTACACAG GGTGTCAATG
ATGGGGCACT TGGTGAAGGT GTTGCCTGGG AGAACCTTTA GGCTTCACTT GGCCGTGTGT
CCGCCCTACA ACGCCGATTT CGACGGAGAT GAGATGAATC TCCACGTCCC TCAGACAGAG
GAGGCGAGGG CCGAGGCTAG GACTTTGATG TTGGTGGAGA AGCACATAAT AACGCCGCGC
TACGGCGGCG CAATTATTGG CGCAAGACAA GACTACATAA TTGGCGCCTA CCTCTTGTCG
CATAAGTCCA CGTTTCTCAC CAAGAAGGAG GTGGCGTACC TACTCGGGGC TGGAAAGTCC
GCGGAGGATC CGCCGGAGCC GGCCATTTTA CACCCAGTAG AGCTGTGGAC TGGCAAACAG
ATAATATCCC ACTTCCTTCC AAAAGACTTA AACTGGGTTC AGCCCACCGC GTTTAAGAGC
AAGTGCCAAG ACGCATATAC CTGCGACGGC GACGAGTGGA TCATTGTGAT AAACGGCAAC
TTGGTCAAAG GAGTTTTAGA CAAGAAGTCC ATAGGCGCCG AGCAAGTGGA CTCGCTGTGG
CACCGCATTG CGCGCGACTA CCCGCCAGAG GTGGCTGGGA GGTGGCTCGA CTCATCTCTC
AGACTCTTCC TCAGGTGGCT AGATTTACGC GGATTCACCT TCGGCATGGA CTCGGTGTAC
CTACCTAAGG AGGCATACGA CGAACTGGAC AAGCTAATAG AGAGCGGCTT GAAGAAGGCC
GATGAGCTAA TCCAAGAGTT TAAGAGCGGG AGGCTTGAGG CAATGCCGGG CTTCACAGTG
GAGGAGACCT TTGAGAACAA GATTACAGAG GTGTTGTCGA GAGTCCGCGA AGACGCAGCA
ACCGTTGTTG AGAAGTACAT CAGGAAAAAT AGCGAGGGCT ACCTAATGGC CAAGACGGGG
GCACGCGGTA GCATTGTAAA CATCGTGCAA ATGGTGGCCA CCCTTGGCCA GCAGACTATA
CGCGGCGAGC GTATAAGACG TGGATACCGA ACGAGGACTC TGCCCCACTT CCCTGTGGGA
GACATAGGCG CCTACGTAGG CGGCTTTGTC AAAAGCTGTT TTAGGTGCGG CTTATCTCCA
GTGGAGTACT TCTTCCACGC AGCGGCGGGG AGAGACGGGC TGATAGACAC TGCAGTACGC
ACCGCGCAGT CGGGCTACAT GCAACGTAGA CTTATAAACG CGCTTCAAGA CGTCTACGTG
GCCTACGACG GCACAGTGAG ATTCAGCGGG TCAACTTTGC TCCAAGTGTT GTACGGGGAA
GACGGCGTCG ACGTCAGCAA GTCCGACCAC GGAAAAGTTG CTGACGTAAA ATCGCTTAGG
CTATGGGTGC GGTAA
 
Protein sequence
MSLREALDSV PRKIIKSIRF GILSPDMIRK YSVMEVTTSE VYDEGGLPVR GGIADRRLGV 
SEPGARCETC GQTHDVCPGH FGHIELVKPV IHVGYARIIY DVLRATCPNC GRIMLKDEEI
KRYKERLDRL KGRWRLLAQN LQEKIKKKAA ERATCPHCGY KRNKVRFERP YYFYEETENG
ALVKLDPETL RERLAKVPND DLELLGINPV VARPEWAILK VLPVPPPHVR PSIQLETGIR
SEDDLTHKLV DIIRMNEKLK IALETGAPTN VVDNLWDLLQ YHVATYFDNE LPGIPVAKHR
GGRPLKGIAQ RLKGKEGRFR GSLSSKRVNF SARTVISPDP HISINEVGVP IDIAKVLTVP
ERVTTWNIDA LREYVLRGPE AWPGANYVIT PEGRRIDLRY VKDRRALAER LAPGWIVERH
LVDGDIVLFN RQPSLHRVSM MGHLVKVLPG RTFRLHLAVC PPYNADFDGD EMNLHVPQTE
EARAEARTLM LVEKHIITPR YGGAIIGARQ DYIIGAYLLS HKSTFLTKKE VAYLLGAGKS
AEDPPEPAIL HPVELWTGKQ IISHFLPKDL NWVQPTAFKS KCQDAYTCDG DEWIIVINGN
LVKGVLDKKS IGAEQVDSLW HRIARDYPPE VAGRWLDSSL RLFLRWLDLR GFTFGMDSVY
LPKEAYDELD KLIESGLKKA DELIQEFKSG RLEAMPGFTV EETFENKITE VLSRVREDAA
TVVEKYIRKN SEGYLMAKTG ARGSIVNIVQ MVATLGQQTI RGERIRRGYR TRTLPHFPVG
DIGAYVGGFV KSCFRCGLSP VEYFFHAAAG RDGLIDTAVR TAQSGYMQRR LINALQDVYV
AYDGTVRFSG STLLQVLYGE DGVDVSKSDH GKVADVKSLR LWVR