Gene Pcal_2060 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2060 
Symbol 
ID4910222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1912814 
End bp1913506 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content58% 
IMG OID640125813 
Productphosphatidate cytidylyltransferase 
Protein accessionYP_001056941 
Protein GI126460663 
COG category[I] Lipid transport and metabolism 
COG ID[COG0170] Dolichol kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCAAAAT GGGCGTCGTT AAAGACTCTC GCGGCGAGAA AGGCGATCCA CGTTGCCTTT 
GTAGCGTTGC TCGCAGTGCC CTTCCTAGTA GACGTCTCTG CCGAATTGTA CATCTCCCTA 
TTGGTGGTGG CCAGCGGCTT CATTTACTCG ATACAAGTCA GGCAGCCGGC CGCGTGGGTT 
GAATTCCGCC GCAACGTGTT TAAGACCTTT GAGGACTTGT TCAACAGGCT TGAACAACTC 
ATCCCCATTG AGAGGCCAGA GCTAAGGCTT CAGTACCAGA GAGCCCTTAG GCAACTGGAG 
GAGTTGATAG ACATGGCGGA AAGAGACTAC GAAAAGAGAC ATGGCTACCT CGGCGTTTTA 
ATGGGCGGAG TAGGCTTCCT AGCCGCCTTG ACCCTCTTTG GCAGGCAACA CCTACTCGCC 
TCCATAGTGA GCATGGCCGT CTACGACACG GTAAGCGCCG TGGTTGGGAC AGCCGTTGGG 
GGCAGAAAAA TTGGGAGAAT AACCGTGGCC GGTACCCTCG CCGGGGCTTT AGCCAACGTA 
GTGGCGCTGA TGGCCGCGGG CTACCCGCCG CTGGCGGCCC TAGCCATCAC CGCGCTGGTG 
GTGGTGGCAG ATGCGACAAG CCCAGAGGAC AACCTCACAA TACCCGTCGC CGCCGCGGCG 
GGGTCCTACC TATCTGGCCT CCTGCCTCGG TAA
 
Protein sequence
MSKWASLKTL AARKAIHVAF VALLAVPFLV DVSAELYISL LVVASGFIYS IQVRQPAAWV 
EFRRNVFKTF EDLFNRLEQL IPIERPELRL QYQRALRQLE ELIDMAERDY EKRHGYLGVL 
MGGVGFLAAL TLFGRQHLLA SIVSMAVYDT VSAVVGTAVG GRKIGRITVA GTLAGALANV 
VALMAAGYPP LAALAITALV VVADATSPED NLTIPVAAAA GSYLSGLLPR