| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2052 |
|---|
| Symbol | |
|---|
| ID | 4910062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1904013 |
|---|
| End bp | 1904951 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640125805 |
|---|
| Product | pyruvate ferredoxin oxidoreductase subunit gamma/delta |
|---|
| Protein accession | YP_001056933 |
|---|
| Protein GI | 126460655 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1014] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit
[COG1144] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit |
|---|
| TIGRFAM ID | [TIGR02175] 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family
[TIGR02179] 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.227977 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTGG AGACAGTCTG GCTAGGCCGC GGCGGGCAGG GCATTGTCAC AGCCACGTAC
ATTATAGCAA ACGCCGCGGT GATAGACGGG CTCTACGCCA TTGCCAACCC CGAGTTCGGC
GCCGAGAGGA GGGGCGCCCC CGTCAAGGCC TTTCTCACAG TTAGCAAAGA CCCCATAGAG
GACCAAGAGC CGGTGAAGAC CCCCGACGTG GCCGTGATCT TCGACGACAA GTTAATTGAC
CCAATGAGGT TTGCCATAGA CGCAGTCAAG CCTGGCGGCT ACATAATTCT CAACACAGGT
AAGAGGCCAG AGGAGGCGAG GAAGCTCGTG GGCAGAGACG ACGTCTACCT AGTTGTGTTA
GATGCCATAG ACATAGCAAG ACGTCACTTG AAGCTGGACA TTCCCAACGG GCCGCTGGCT
GGCGCCTTTG CCAAGGTGAT GGGCTTCCCC TCCCTGGAGT CCATAAGACA AGCGTTTGAA
ACCCAGCTGG GGAAGGCGGT TGAGGAGAAC TTCGCGGCAA CTAAGGAGGC CTACGAGACG
GCTGTGGTCA TACCCCCAGA GAGAGTGGAC AAGTCGGCTA AGCCGAAGGG CATCATATCC
ACAACCTCTG CCTTCTTGAC TGGGCCGTAC GACATCGTGG GCTGGCAAGA GGTGAACAAG
GCTGGGGCTG TCTTCCCGGG CACAAGCTTC TTCTACACGA CGGGGGGCTG GCGCATTGAC
AAGCCGGTGA TAGACCACTC CAAGTGTATA ATGTGCCGCA AGTGCTGGCT GTACTGCCCC
GACGACGCTA TAATAGAGGC CTGGAGAGAG GTGGAGGGGC CCAGGGGGAG GAAGTTCCGC
ATGAAGTTCA TAGACTTTGA CTACGCCTTC TGCAAGGGTT GCGGCGTGTG CGCTGAGGTG
TGCCCAACTG GGGCAATACA GATGGTTAGG GAGATATGA
|
|---|
| Protein sequence | MRVETVWLGR GGQGIVTATY IIANAAVIDG LYAIANPEFG AERRGAPVKA FLTVSKDPIE
DQEPVKTPDV AVIFDDKLID PMRFAIDAVK PGGYIILNTG KRPEEARKLV GRDDVYLVVL
DAIDIARRHL KLDIPNGPLA GAFAKVMGFP SLESIRQAFE TQLGKAVEEN FAATKEAYET
AVVIPPERVD KSAKPKGIIS TTSAFLTGPY DIVGWQEVNK AGAVFPGTSF FYTTGGWRID
KPVIDHSKCI MCRKCWLYCP DDAIIEAWRE VEGPRGRKFR MKFIDFDYAF CKGCGVCAEV
CPTGAIQMVR EI
|
|---|
| |