Gene Pcal_2046 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2046 
Symbol 
ID4910109 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1899504 
End bp1899941 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content57% 
IMG OID640125799 
ProductNADH-quinone oxidoreductase, B subunit 
Protein accessionYP_001056927 
Protein GI126460649 
COG category[C] Energy production and conversion 
COG ID[COG0377] NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-S oxidoreductases 
TIGRFAM ID[TIGR01957] NADH-quinone oxidoreductase, B subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0609806 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAACTC TTTTGAAAAA GACCGTGGAC AAGGTGGCCA AGTGGGGCAC TAAGTGGTCT 
CTATGGCCGC CCCACCTCGT CACCGCCTGT TGCGGCGTGG AGTTCGGCCA CGCCTTCGGC 
TCCGCCTACG ACGCCGAGAG GTTTGGAATG CTTCCCATGG GCTCCCTTAG GCAGAGCAAC 
ATAATTGTGA TTGAGGGCAC GATCACCATG AAGATGGCGA AGTTTGTAAA ATATGTATAC 
GAGCAGATGC CCGAGCCCAA GTACGTAATA GCCATGGGCG CCTGCGCCAT TAAGGGCGGG 
GTCTTCTACG GGAGCTACCA CATGGTCCCC GCCTCCAAGG TGGTGCCAGT CCACCAATAC 
GTCTCCGGCT GCCCCCCGAC CCCCGAGGCC CTCCTAAAAG CGGTGAAAAA CCTCCAGGAC 
AAGATATATG CAGAGTGA
 
Protein sequence
MRTLLKKTVD KVAKWGTKWS LWPPHLVTAC CGVEFGHAFG SAYDAERFGM LPMGSLRQSN 
IIVIEGTITM KMAKFVKYVY EQMPEPKYVI AMGACAIKGG VFYGSYHMVP ASKVVPVHQY 
VSGCPPTPEA LLKAVKNLQD KIYAE