Gene Pcal_2042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2042 
Symbol 
ID4910040 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1895594 
End bp1896226 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content61% 
IMG OID640125795 
Productcyclase family protein 
Protein accessionYP_001056923 
Protein GI126460645 
COG category[R] General function prediction only 
COG ID[COG1878] Predicted metal-dependent hydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0111986 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTACATAG ATTTGACACA GTACCTGGGT CCAGACACGC CGGTGTTCCC GGGCTATCCA 
AGGCCGGCTC TCCTGCAGTG GAGTAAATAC GACGTGCACG GCTACTACTC CAACGTCCTC 
TTTGCCCCAG AGCACGTGGC CACGCACGTG GACTCCCCCG CGCACTTTGT CCCAGGCGCC 
AAGACGGTGG ACCAGATAGA CCCGGCCAAG TTCATCTCCA GATTCGTGGC CCTGGACTTC 
TCCCACCTCC CGCCGAGAGG GGCCGTGACG CTTAGGGACT TCGAGGCGTC TCTGCCGCGG 
GGCGTGGAGC TGGGGCCCGG CTGGGCTGTG CTAATAAGGA CGGGCTACGA CGCGTATGCG 
GGAAGCGAGA AGTGGCTTGA GCACCCCGAC ATAAGTCCAG AGCTGGCGGA GCACTTGGCC 
AAGCTCGGGG TAAACGCCGT TGGAGTAGAC GCCCCAAGCC CAGACCACGC CCCCTTCGAA 
GTGCACAAAA TTCTGCTGAG CCGCGAGGTG TTGATATACG AAAATTTGAC GAACCTAGGG 
GCCGTGGTTG GGAGGACTGG TCTCTTCATA GGCCTGCCGT TGAAGATAAA GGGCGGCAGC 
GGCGCGCCAG TGAGGGCTCT GGCGCAAGTA TAG
 
Protein sequence
MYIDLTQYLG PDTPVFPGYP RPALLQWSKY DVHGYYSNVL FAPEHVATHV DSPAHFVPGA 
KTVDQIDPAK FISRFVALDF SHLPPRGAVT LRDFEASLPR GVELGPGWAV LIRTGYDAYA 
GSEKWLEHPD ISPELAEHLA KLGVNAVGVD APSPDHAPFE VHKILLSREV LIYENLTNLG 
AVVGRTGLFI GLPLKIKGGS GAPVRALAQV