Gene Pcal_1995 details

Gene Information

• Locus tag: Pcal_1995
• Symbol: rpl10e
• ID: 4908957
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1852290
• End bp: 1852826
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640125747
• Product: 50S ribosomal protein L10e
• Protein accession: YP_001056876
• Protein GI: 126460598
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0197] Ribosomal protein L16/L10E
• TIGRFAM ID: [TIGR00279] ribosomal protein L10.e

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 30
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAGCTA GGCCGGCGCG TTGTTACAGG AGGATTAAGG GGCCGCCGTA TACGAGGGAG 
GAGTACATAC ACGGCGCGCC GATGATCCAA ATACCAAAGT TCGACATGGG CACCACAAGC 
GCCGCGGCGC GGGCCGCCTT CACCATGGTC GCGAAGTTGG TAGCAGAGGA GCGCGGCCAG 
ATTAGGATGC AGGCCCTAGA GGCGGCCCGC CAAATATCCT CAAAGTACCT CACTAAGTAC 
GTAGGCGACG CCAACTACTA CCTCAGGCTA AACGTGGTCC CCCACCACGT CTTGAGAGAA 
AACAGGATGT TGGCCATGGC GGGCGCAGAC CGTCTCCAGG AGGGCATGAG GCTGGCCTTT 
GGCTCGCCGG CGGGGAGAGC AGCGCGTGTG GAGCCCGGGC AGGTTATATT CTACGTAGAA 
TTCAAGCCGG AACACTTGGC GCACGTGAAG GAGGCCCTAC GCCGCGCGGC GTCGAAGCTA 
CCAATACCTA CGCGCATCGT CGTCGAGCCG AAGGGAGATG GTAAGACAGC TTCATAG 

 

Protein sequence

MPARPARCYR RIKGPPYTRE EYIHGAPMIQ IPKFDMGTTS AAARAAFTMV AKLVAEERGQ 
IRMQALEAAR QISSKYLTKY VGDANYYLRL NVVPHHVLRE NRMLAMAGAD RLQEGMRLAF 
GSPAGRAARV EPGQVIFYVE FKPEHLAHVK EALRRAASKL PIPTRIVVEP KGDGKTAS