| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1956 |
|---|
| Symbol | |
|---|
| ID | 4910110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1823382 |
|---|
| End bp | 1823915 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640125709 |
|---|
| Product | NADH dehydrogenase (ubiquinone), 30 kDa subunit |
|---|
| Protein accession | YP_001056838 |
|---|
| Protein GI | 126460560 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCGA AGGCCCCGCC CAAGTGCCCC CAGCCAGCCG ACCACCCGCT CTTGGCCAAG
GTGAAAGAGG CGCTGGGGGG CGCGGTGCTG TCCCACGGAG TGACGCCGGA GGGCCACCTC
TGCGTCATGG TCCCCGCCGC GAAGATACGG GACGTGGCCA ACGCGGTCAA GTCCATGGGC
TTTGACCACG TCCTCTCCCT CAGCGCCGTG GACTACGTAG GGGAGAAGAA GTTCTTGGTG
ATGTACGTCT TTGCCTCATA CCTCTCGCCG GAGCTCAAAA ACCAGCTTCT CCACGTACGT
GCCGAGATAC CGCGGGACGA CCCAAAGATC GCCTCCATAG CTGACATCTT CCCATCAGCC
GACTACGAGG AGAGGGAGTG CCACGAGATG TTTGGCATAT GGTTTGAGGG AAATCCGCAC
ATGGGCAAGC GCTTTCTCCT CGACCCAGAC TGCTGCATCG ACGAGAAGAC GGGCAAGCCG
CTGTATCCGC TGAGAAAAGA CTTCAAAGTC CCCGACTGGG GCCTAATGGG CTAG
|
|---|
| Protein sequence | MSAKAPPKCP QPADHPLLAK VKEALGGAVL SHGVTPEGHL CVMVPAAKIR DVANAVKSMG
FDHVLSLSAV DYVGEKKFLV MYVFASYLSP ELKNQLLHVR AEIPRDDPKI ASIADIFPSA
DYEERECHEM FGIWFEGNPH MGKRFLLDPD CCIDEKTGKP LYPLRKDFKV PDWGLMG
|
|---|
| |