| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1917 |
|---|
| Symbol | |
|---|
| ID | 4908504 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 1785960 |
|---|
| End bp | 1786499 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640125668 |
|---|
| Product | hemerythrin HHE cation binding domain-containing protein |
|---|
| Protein accession | YP_001056799 |
|---|
| Protein GI | 126460521 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3945] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCAAGG TGAGAGTGAA GTACGTGACT TCTGTCCTCA GGGAACACCA CGACCACATC
CTCAGAGCCC TCGCCGTTTT AGACAAGGCC CTCTCTTCCC CCAGCCCAGA CCCCGACGAC
GTGTACACCT TGGTGCAGTT CGCCCAGCGC TTCGTTGACG CGTGTCACCA CGGCGTGGAG
GAGTACGTGC TCTTCCAGGG GGCAAACCGG GCGGGGTTCC CCCTGACCGG CGGCCCAATA
CAGGTCATGG TGTGTGAACA CGGCGTGGGG CGCTACTTGG CTAGAGTCAT GGAGGAGCTG
TACCACGCGT GGAAGTCCGG CGACAAGGAG GCCCTACGGG ACTTGGCCGA CTACGCGCGC
ATATACATAG ACCACCTCTC CCAACACATA GACAAGGAGA ACAACGTCCT TTTCCCAATG
ATAGAGTCCA CGGCCCACGA GGCGTCCTCC TCCAAGACCG TGGAACAGAT AGAGCGGGAG
AACGACCACG AGAGGTGGAT CGCCGAGTTG GACAGAGTGG CCAAAAAGTA TGGACTATAG
|
|---|
| Protein sequence | MGKVRVKYVT SVLREHHDHI LRALAVLDKA LSSPSPDPDD VYTLVQFAQR FVDACHHGVE
EYVLFQGANR AGFPLTGGPI QVMVCEHGVG RYLARVMEEL YHAWKSGDKE ALRDLADYAR
IYIDHLSQHI DKENNVLFPM IESTAHEASS SKTVEQIERE NDHERWIAEL DRVAKKYGL
|
|---|
| |