Gene Pcal_1877 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1877 
Symbol 
ID4910159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1743538 
End bp1744740 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content58% 
IMG OID640125628 
ProductAAA family ATPase 
Protein accessionYP_001056759 
Protein GI126460481 
COG category[R] General function prediction only 
COG ID[COG1373] Predicted ATPase (AAA+ superfamily) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.785569 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTAAAGG AGATGACTCT GGAGTACGTC GAGTCGCTGA AGTACGTAGA CGAGATACCG 
CGGAGGTTCG CCCTCCCAGA GGCGGGGAGC GACATAGTGG CTGTGGTGGG GCCGCGGCGC
GTGGGAAAGA CCTTTACACT GTTGAAAAAG GCCGCGGAGA CGTTGAAGGC CGGGGGCCAG
GCCGTCTACG CCACCTTTGA CAACCCAGAG CTGAGGAAGT GGAGCGCCAA GAAGCTGGCA
GAGGAGGTGC GCTCTCTCTA CCCCAAGGGC AGAGTGGCCC TCTTCTTAGA CGAGGTGCAG
GAGTGGCCCA ACTGGGACTA CAACCTTAGG TGGCTACACG ACGTGAAGGA CTTCCAGATA
TACGCCACGG GCTCCACCTC GGCCCTCTCC GTAGACCAAG TGCCGAGCCG CCTCAGAGGC
AGGTACATCT CCAAGCTACT CCTGCCGCTC TCATTCGCCG AGTTGGCCCA CGGCACGGCG
CCCCACACCT TCCGCGAGAG GGGGGCCCTC AAGAGCCTAC TCGACGACTA CCTCAAATGG
GGCGGCTTCC CCGAGGTGTG GAAAAGCCGC TCACTCGACA AAGTGAGAGC CCTCCTCGAC
ACAGTCTTCT ACAGAGACGT AGTAGAGGCC AGGGGAGTCA GAGAGCCTGA GGAATTCGAG
GCTCTCTTCT ACACAGTCGT AGAGAACTAC GCCAACCCAG TCACCTGGCG AAGCCTCGCC
CGCGCCCTCG CCTCAGAGGG AGTAGAAATA GACCCCAAAA CCGTGATAAA ATACGTCAAA
TACATGCAGT GGGCCTACCT AATATTCGTC GTGCCCCCCT ACGGCAGGCG GCGGGGAGCC
CCCCGCAAGA TATACCTCGT AGACCCAGCC TTCACAAATT TGACAAAAGC CGGGCTAGAC
AAGGGGCGGA AAATAGAAAA CGTGACATAC CTACACCTAC TGAGAAAAGC CATCGAAGAA
GGCGGGAAGA TCTACTACAT CAAAAACAGA GAAGAAGTAG ACTTCTACTA CGTGGGCCAG
GAGAGGGCCG TAGTAGAGGC CGCCTACGAC CCCGACGAGA GCCACATACG AAAGGCCGCC
AAAGCCGCCG AAAAACTAGG ACTAAAAAAA GCCCACGTGG TCACATGGGA CACAGAGGAC
ACGCGGCGCG TCGGCCAAGT CGACATAGAG ATAACCCCCC TATGGAAGTG GCTACTCCAG
TAG
 
Protein sequence
MLKEMTLEYV ESLKYVDEIP RRFALPEAGS DIVAVVGPRR VGKTFTLLKK AAETLKAGGQ 
AVYATFDNPE LRKWSAKKLA EEVRSLYPKG RVALFLDEVQ EWPNWDYNLR WLHDVKDFQI
YATGSTSALS VDQVPSRLRG RYISKLLLPL SFAELAHGTA PHTFRERGAL KSLLDDYLKW
GGFPEVWKSR SLDKVRALLD TVFYRDVVEA RGVREPEEFE ALFYTVVENY ANPVTWRSLA
RALASEGVEI DPKTVIKYVK YMQWAYLIFV VPPYGRRRGA PRKIYLVDPA FTNLTKAGLD
KGRKIENVTY LHLLRKAIEE GGKIYYIKNR EEVDFYYVGQ ERAVVEAAYD PDESHIRKAA
KAAEKLGLKK AHVVTWDTED TRRVGQVDIE ITPLWKWLLQ