Gene Pcal_1826 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1826 
Symbol 
ID4910210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1691940 
End bp1692605 
Gene Length666 bp 
Protein Length221 aa 
Translation table11 
GC content59% 
IMG OID640125576 
Producttranslation initiation factor IF-6 
Protein accessionYP_001056709 
Protein GI126460431 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1976] Translation initiation factor 6 (eIF-6) 
TIGRFAM ID[TIGR00323] translation initiation factor eIF-6, putative 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.644834 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAGTTCG ACATCTCCCC CGCCAGGCTG TTCGGCTCGT CGTCCGTCGG AGTATTCCTA 
GCCACTAACA ATACCGTCAC CTTTGTGCCG CCTGACACCC CCGAGAAAAT AGACGATTTG
GTGCGCAACA CCCTCCGCAC AACGGTGGCC AAGTTCACCA TAGCCAAGTC GCCCCTCCTT
GGCATATTCA CCGTAGTAAA CGACAACGGA GTCCTCCTCT CCCCGCTGGC CCTCGAGGAA
GAGGTCAAGC TCTTTAAGTC CCTTGGGCTA AACGTGGGCA TCGTGGCCAC GAAGTACACA
GCGGTGTCCA ACCTCGTGCT TGCAAACAAC AGGGCGGCTC TGGTGTCCCC CCTCCTGGAG
CCTCAGGCGC GTAAGACCGT GTCCGACGTG CTCGGAGTCG AGGTGGTGGT AGACACAATA
GCAGGAAATC CGCTGGTGGG GTCACTCGCA GTCGTCAACT CCCGTGGCTT GTTAGTGGCC
CCCGAGGCCA CAGACGACGA CCTGAAGAAG CTGGCCGACT ACTTCAAGGT CAAGGTAGAC
GTAGGCACAG TGAACAAGGG CAAGAGCTTC CTGAGAGGGG GGCTTGTGGT CAACGACTAC
GGGGCCCTTG TGGGCGACGA GACGGCTGGC CCTGAACTGA TGAGGATTAC TCAAGTACTT
GGCTAG
 
Protein sequence
MKFDISPARL FGSSSVGVFL ATNNTVTFVP PDTPEKIDDL VRNTLRTTVA KFTIAKSPLL 
GIFTVVNDNG VLLSPLALEE EVKLFKSLGL NVGIVATKYT AVSNLVLANN RAALVSPLLE
PQARKTVSDV LGVEVVVDTI AGNPLVGSLA VVNSRGLLVA PEATDDDLKK LADYFKVKVD
VGTVNKGKSF LRGGLVVNDY GALVGDETAG PELMRITQVL G