Gene Pcal_1805 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1805 
Symbol 
ID4908725 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1673298 
End bp1673723 
Gene Length426 bp 
Protein Length141 aa 
Translation table11 
GC content55% 
IMG OID640125554 
Producthistidine triad (HIT) protein 
Protein accessionYP_001056688 
Protein GI126460410 
COG category[F] Nucleotide transport and metabolism
[G] Carbohydrate transport and metabolism
[R] General function prediction only 
COG ID[COG0537] Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.496797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTGTA TCTTCTGCAA GATTGTCCGC GGGGAGGCGC CAGCGTGGAA AGTGTACGAG 
GATGACAAAT TCGTAGTGAT TCTAGACAAG TATCCGGCCT CCTTTGGCCA CCTCCTGGTG 
GTGCCCAAGA GCCACTATGT GAATGTGGTA GATGCGCCGC TTGATGTGGC GACGCGCGGC 
TTTGAAATCG CCGCAAAGCT TGCCAAGGCC TGGGCCGAGC TGGGGGCAAA GGGGGTCAAT 
ATTGTGACAA ACGCAGGGCG AGAGGCTGGG CAAGTGGTCT TCCACTTCCA TATACATGTG 
ATCCCCAGGT GGGGCGGCTC GCTTGTCTGG CATGGACGCG ACGAGATCAA GGAGAGCGAG 
GCGAGGGAGG TGGTGGAAAA GCTTTCCAAA GTATTACCCA AGTATTTTGG GCGTCCAATT 
TATTAA
 
Protein sequence
MDCIFCKIVR GEAPAWKVYE DDKFVVILDK YPASFGHLLV VPKSHYVNVV DAPLDVATRG 
FEIAAKLAKA WAELGAKGVN IVTNAGREAG QVVFHFHIHV IPRWGGSLVW HGRDEIKESE 
AREVVEKLSK VLPKYFGRPI Y