Gene Pcal_1757 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1757 
SymbolribH 
ID4909689 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1633020 
End bp1633472 
Gene Length453 bp 
Protein Length150 aa 
Translation table11 
GC content51% 
IMG OID640125504 
Product6,7-dimethyl-8-ribityllumazine synthase 
Protein accessionYP_001056640 
Protein GI126460362 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0054] Riboflavin synthase beta-chain 
TIGRFAM ID[TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00062213 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGTAAAGC TGGCGTTAGT GGTAGCGGAG TTCAACTACG ACATTACGCA CCTCATGTTG 
CAAAAGGCGT TGGAGCACGC CAAATTTTTA GGTGCCGAAG TTACCTATGT AGTTAAGGTG 
CCCGGCGTAT TTGACATTCC AATGGTCCTC AAAGAGCTGG CGCTGAAGGA GGATGTAGAC 
GCCGTAGTGA CGCTAGGCGC CGTGATACAG GGGGCTACAA AACACGACGA AATAGTGGCC 
CAACAAGCAG CTAGAAAGAT ACTGGACTTG GCTGTGGAGA GCGGGAAGCC CATAACCCTC 
GGCATTATAG GCCATGGAGC CAATAGGATG CAGGCTTTGG AGAGAGTTGA GGAGTATGCC 
AGACGCGCTG TAGAGGCGGC GGTTAAACTG GCACGTAGAA AGAAGCTTCT GAAGGAGGCA 
AAATACGGCG GCTCGACAGT TGTAATAGAC TAA
 
Protein sequence
MVKLALVVAE FNYDITHLML QKALEHAKFL GAEVTYVVKV PGVFDIPMVL KELALKEDVD 
AVVTLGAVIQ GATKHDEIVA QQAARKILDL AVESGKPITL GIIGHGANRM QALERVEEYA 
RRAVEAAVKL ARRKKLLKEA KYGGSTVVID