| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1749 |
|---|
| Symbol | |
|---|
| ID | 4909201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1626357 |
|---|
| End bp | 1627643 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640125496 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001056632 |
|---|
| Protein GI | 126460354 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.00852065 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGATTTTGC GACTCCTTGG CGGCGCTGGC GAAGTGGGCA GGCTTGCTGT ACTCATAAGG
ACGGCCTACA ATGGCATACT GTTAGACTAC GGCGTAAATT TTGACGCAGA AGGAAGGCCT
GTTTTCCCAC TTCACGTACG TCCCCGCGAT CTTACTGCAG TTTTTTTAAG CCACGCACAC
CTAGACCACA GTGGGGGTGT GCCAACGCTT TACGTGACGA CAAAGACGCC GCTTTATGCC
ACGCCTTTGA CTATGGAACT TTCAGACCTC ATGTATGCAG ACGCGATAAA GCTCTCCGGC
TACTACCTCC CATACACCCA AGAAGAGGTG AGAGAGGTCA TGTCTAGCGC CTTTCCTCTC
ACATATGGCG AGCCGGTGGA AATCGGCAGA GACGCCGTGT TGACGACGTA TAACGCAGGC
CACGTGCCGG GGAGCGCGAT AGGCGTTATA GAGGTCGAGG GGGCGACGGT GGTATTCACC
GGCGATTTTA ACTTGTCTGA TACAAATCTG CTGAGGGGGG CCGACTTGTA CAATATACCA
AAGAACCCAG ACGTGGTAGT TATGGAGGCC ACATACGCCT CCTCGACGCA TCCGCCTAGA
GACAAGATGG AGACGGAGTT CGTAAATGCG GTGAGGGAGG TAGTGGAGGG CGGCGGCACA
GTGCTGATAC CCTCCTTCGC CCTTGGAAGA GCCCAAGAAA TACTGTTGAC ATTAGTAAAA
AATAAGCTTG ATAGTTACCC AATATACATA GATGGGCTCG CGCGCCAGAT TAACCAGATA
ATTGGCAGAT ATCTGCACTT GGTCAGAGAT CCGGCACTTT ACAAGAAGGC GCTTGAGGTA
GCTATAGAGG TGCCAAACGC CTATGTGAGA AAAGGCGCGG CAGAGGAGCC CTCGATAATC
ATAGCGCCAG CTGGCATGCT AAAGGGGGGA GCCGCCTTGT TTTACTTCAA GCGGCTTGCC
GCCAACAAGA AAAACGGAAT CTTTCTGCCA TCGTTTCAAG CTCCGAATAC GCCTGGGTTC
GAAATCTTGA GCAAAGGGCA TGCCGTGGTA GAAGGCGCCA CCATAAAGGT CGAGGCGAGA
ATTGAGTGGT TTGACTTCAG CGCTCACGCC GGTAGAGACG AGCTAAGAGC CTTCATAAAA
CACTTCCACG AAGATACAAA CATCCTGCTT GTTCACACAG ACCCTGCGGC ATCGTCACCA
TTCGTTAAAC AGCTAATCGA AGAGGGCCGC AGAGTATACC TCCCCACAAC CGTCGGCGAG
GAGCTATACC TGGATTTAAA GAAGTAG
|
|---|
| Protein sequence | MILRLLGGAG EVGRLAVLIR TAYNGILLDY GVNFDAEGRP VFPLHVRPRD LTAVFLSHAH
LDHSGGVPTL YVTTKTPLYA TPLTMELSDL MYADAIKLSG YYLPYTQEEV REVMSSAFPL
TYGEPVEIGR DAVLTTYNAG HVPGSAIGVI EVEGATVVFT GDFNLSDTNL LRGADLYNIP
KNPDVVVMEA TYASSTHPPR DKMETEFVNA VREVVEGGGT VLIPSFALGR AQEILLTLVK
NKLDSYPIYI DGLARQINQI IGRYLHLVRD PALYKKALEV AIEVPNAYVR KGAAEEPSII
IAPAGMLKGG AALFYFKRLA ANKKNGIFLP SFQAPNTPGF EILSKGHAVV EGATIKVEAR
IEWFDFSAHA GRDELRAFIK HFHEDTNILL VHTDPAASSP FVKQLIEEGR RVYLPTTVGE
ELYLDLKK
|
|---|
| |