Gene Pcal_1745 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1745 
Symbol 
ID4909641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1623638 
End bp1624612 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content51% 
IMG OID640125492 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001056628 
Protein GI126460350 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0156804 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTTGT TAGAGGTCCA CGACCTTAAG ACGTGGTTCC CCGTTGGAAG AGGGCTCTTT 
AAGCCTGTGA AATACGTAAA GGCTGTAGAC GGCGTTAGTT TTACGCTGGA TGCTGGAGAG 
GTTCTCGCAG TTATTGGCGA GTCTGGCTCT GGAAAAACGA CGCTGGGAAG AACTGTGCTT 
AGGCTGATAA GGCCGACTGC CGGGAAGATA GTTTTCGATG GAAAAGACAT CACCTACGCG 
CCCGACGCCT CTCTCAAGTG GTACCGATTC TCTACCGCCA TGATATTCCA AGACCCCTTC 
AGCTCGCTTA ACCCATATCA CACTGTGCAA TACATATTGG AAGAGCCTCT AATTCTGCGG 
AAAGTGCCGC CCCAGGAGAG GCGGGAGCTC GTGGTAAAGG CGCTTGAAGA GGTTAAGTTG 
GTGCCGCCTG AAGATTTTCT AAAGAAGTAT CCGCATATGT TAAGTGGGGG TCAAAGGCAA 
CTGGTGGGAA TTGCAAGGGC GTTGATTACT AGGCCGAGGT TCATTGTGGC AGACGAGCCC 
GTGTCTATGC TAGACGTCTC TATCAGAGCT GAGATACTTT CCCTAATACG GTCTCTTCAG 
TCGAAGTACA ACATAGCCAT GATGTACATC ACTCACGACA TAGCCACGGC CAAGTACTTG 
GCGGATAAAC TACTAGTAAT GTACGCAGGT AAGGCGGTGG AATACGGGCC GTTTAGAGAT 
GTGATAAAGG AGCCTCTTCA CCCCTACACT CAGGCGCTCA TAGAGGCGTT GCCAGATCCA 
GATCCCACGA ACAGGCTTAA AATACGTAAA GTCCCGCCGG GAGAGCCGCC AAGTCTAGTC 
AATCCGCCGA CTGGGTGTAG ATTCCACCCA CGTTGCCCAT ATATGATAAA GGGCGAGTGC 
GACAAAGAAG AGCCGCCCCT CGTGGAAGTA AAGAGGGGCC ACTACGTGGC CTGCTGGCTT 
CATATAAAGC GTTAA
 
Protein sequence
MPLLEVHDLK TWFPVGRGLF KPVKYVKAVD GVSFTLDAGE VLAVIGESGS GKTTLGRTVL 
RLIRPTAGKI VFDGKDITYA PDASLKWYRF STAMIFQDPF SSLNPYHTVQ YILEEPLILR 
KVPPQERREL VVKALEEVKL VPPEDFLKKY PHMLSGGQRQ LVGIARALIT RPRFIVADEP 
VSMLDVSIRA EILSLIRSLQ SKYNIAMMYI THDIATAKYL ADKLLVMYAG KAVEYGPFRD 
VIKEPLHPYT QALIEALPDP DPTNRLKIRK VPPGEPPSLV NPPTGCRFHP RCPYMIKGEC 
DKEEPPLVEV KRGHYVACWL HIKR