Gene Pcal_1744 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1744 
Symbol 
ID4908178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1622668 
End bp1623636 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content49% 
IMG OID640125491 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_001056627 
Protein GI126460349 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.12197 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGCCTC TGTTAGAGCT GAGAAATGTC AAAATGTACT ACGGGGTGAC AAATGGCGTT 
GTAAAAGCCG TTGACGGGGT GTCGTTTGTT TTAAACAAGG GGGAGGCCAT GGCGTTGGTT 
GGAGAGAGCG GCAGTGGAAA AAGCTCCTTG GCGTTTACAA TAATCCGGCT GTTGCCTCGC 
AACGTCGCAG AATTCAGCGG AGAAATCTTG TTACACGACG AGGAGTTGGG CACAGTGGAC 
TTGGCAAAAA TGAGCGAGGA AGAGCTCAGG AGGAAGATTA GGTGGAAGAA AATCTCCATG 
GTTTTTCAAG CCTCTATGAA CGCCCTAAAT CCCATACTAA AGGTGCAGGA TCAAATGGTG 
GAGCCGTTGG TTCTCCACCT GGGTCTTTCT AAGCAGGAGG CCATCAAAAT TGCCGAAGAG 
GCGTTGCTTT CCGTAGGTTT AGCCAAAGAC GTGCTCACGA GATACCCCTT TGAGCTGTCG 
GGGGGCATGA AGCAGAGAGT TGTTATTGCC ATGGCTATTA TGATGAAGCC GAAGTTAGTT 
ATACTAGACG AGCCAACCTC GGCGCTCGAC GTGATAACCC AGGCCAATAT TATGAACCTC 
TTAAAGGAGT TGAAGGCGAA GTTCGACTTG TCGTATATAC TTATTACACA CGACATAGCT 
CTAGCCTCTG AAATAGCTGA CAAAATTGGG GTCATGTACG CTGGTAAAAT CGTCGAAATA 
GCTCCTTCCG ACATATTTTT CAGAAAGCCT AAACACCCAT ATTCGCAGAA GTTGTTGGCT 
GCCGTGCCCA GTCTAAGAGA AGAGAAGGCG ATAGAATACA TCCCAGGCGA TGTGCCCAGC 
TTAATCAATC CGCCGACTGG GTGTAGATTC CACCCACGTT GCCCATATAT GATAAAGGGC 
AAGTGCGAAA GAGAAGAGCC GCCAAGGAAG CAAGTGGAGG GTAGCGAAGT GGCTTGTTGG 
CTGTATTGA
 
Protein sequence
MPPLLELRNV KMYYGVTNGV VKAVDGVSFV LNKGEAMALV GESGSGKSSL AFTIIRLLPR 
NVAEFSGEIL LHDEELGTVD LAKMSEEELR RKIRWKKISM VFQASMNALN PILKVQDQMV 
EPLVLHLGLS KQEAIKIAEE ALLSVGLAKD VLTRYPFELS GGMKQRVVIA MAIMMKPKLV 
ILDEPTSALD VITQANIMNL LKELKAKFDL SYILITHDIA LASEIADKIG VMYAGKIVEI 
APSDIFFRKP KHPYSQKLLA AVPSLREEKA IEYIPGDVPS LINPPTGCRF HPRCPYMIKG 
KCEREEPPRK QVEGSEVACW LY