Gene Pcal_1741 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1741 
Symbol 
ID4908280 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1619971 
End bp1620891 
Gene Length921 bp 
Protein Length306 aa 
Translation table11 
GC content52% 
IMG OID640125488 
ProductD-3-phosphoglycerate dehydrogenase 
Protein accessionYP_001056624 
Protein GI126460346 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.177612 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGGCTC TAATAGCCGA TGCCGTAGAC CCGTTAATAG TAGAGCGGCT AAAGAAGATG 
GGCATAAGGG CCGATGTGAA ACCCGGCATT TCGAGAGAGG AGTTGTTAAA AGTGGTGGGA
GACTACAACA TTTTAATCTT CAGGGGCAGG CTCAAGATAG ACAAAGAGGT AATAGACGCC
GGTAGGAACC TAAAGATTCT GGCCAGGTAC GGCGTTGGGT TAGACAACGT CGACGTAGAA
TACGCAGTGA AGAGAGGAAT CTCTGTGGTG AATGCACCAA ACGCGCCAGC TAGAAGCGTG
GCGGAGCTCA CAATAGGGCT AATGTTCGCA GTAGCGAGGC GGATACCCCT CCTCAGCACA
AAGGTAAAGG CAGGGGAGTG GCCCAAGGGC AAATATGTGG GCATAGAGTT ATTTGGAAAA
ACGCTCGGCG TGGTTGGATT TGGTCGTATT GGGAAAGCTG TGGCGCAAGC GGCGAGGGGG
CTTGGCATGG ATATACTGGC CTACGACGTT ATAGACGTCA AAGACGAGGT GGAGAAAATA
GGCGGCAGAC AAGTGAGCTT AGAGGAGCTT TTAAGGAGAA GCGACGTAAT ATCGCTCCAC
GTCCCGCTCA CCCCGGCCAC GTACAGACTG TTAAACGACG AAAGATTGGC ATTGGTAAAA
GATGGGGCAA TAATAATAAA CACTAGCAGA GGCGAGGTAA TAGATCACGA GGCCCTCCTA
AAGCACTTAG ACAGGCTTTG GGGAGTTGGA CTAGACGTAT TGCCAGAGGA GCCTCCGAGG
AGTGAGACGT TGCGTCAGCT CATAAGTCAC GAGAAGGTGG TGGTTACGCC GCATGTGGGG
TCGGAGACCT TTGAGGCGAT GAGGCGTCTG GCAGAGGAGC TTGCGGACAA CATAGAGGAA
GTTGTCAAAA GGGTGTTATG A
 
Protein sequence
MSALIADAVD PLIVERLKKM GIRADVKPGI SREELLKVVG DYNILIFRGR LKIDKEVIDA 
GRNLKILARY GVGLDNVDVE YAVKRGISVV NAPNAPARSV AELTIGLMFA VARRIPLLST
KVKAGEWPKG KYVGIELFGK TLGVVGFGRI GKAVAQAARG LGMDILAYDV IDVKDEVEKI
GGRQVSLEEL LRRSDVISLH VPLTPATYRL LNDERLALVK DGAIIINTSR GEVIDHEALL
KHLDRLWGVG LDVLPEEPPR SETLRQLISH EKVVVTPHVG SETFEAMRRL AEELADNIEE
VVKRVL