Gene Pcal_1736 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1736 
Symbol 
ID4908679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1615930 
End bp1616490 
Gene Length561 bp 
Protein Length186 aa 
Translation table11 
GC content51% 
IMG OID640125483 
Product2'-5' RNA ligase 
Protein accessionYP_001056619 
Protein GI126460341 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.556008 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGTGA GGAGTTTTGT GGCTATTGAC ATAGAAAATC CCGACGTTGT GAAGAAGATT 
GAGGAGTTTC AGAGGGAGGT CGCCAAGCTT GGCTTAGACA TCAAGTTTGT GGAAAAGGAG 
AACCTCCACA TTACTCTGCG GTTTCTCGGC GAAATACCTC AAAGCCGCGT AAACGACGTT 
GTTAGGGCCT TGTCTTCGTT GAGATTTACG CGTTTTTCTA TGAGGTTGAG CGGAGTCGGG 
GTCTTCCCCG ACTTGTCAAG GCCGCGGGTT TTGTGGATAG GCGTGTCGCA GGGCGCAGAG 
GAGCTTTCGA GGGTTGCCGC CGCCGTTAGA GCGGCCGTGG ATAAGTACGC GGAGCATGTC 
GAGGAGAGAG ATTTTACGCC GCATCTCACT GTGGGCAGGT TGAAGTCTAG TCGAAACGTG 
GAAAGGCTTA GGGACCTTGT CGCACGCTAC AACGGCGTAG AGTTTGGCGT TGTGGAAGTG 
ACTAGCATTA AGCTGAAGAA GTCCGTTCTT ACTCCGCGTG GACCTATTTA TAGCGACTTA 
TTTACGCTAA ATCTTACGTG A
 
Protein sequence
MSVRSFVAID IENPDVVKKI EEFQREVAKL GLDIKFVEKE NLHITLRFLG EIPQSRVNDV 
VRALSSLRFT RFSMRLSGVG VFPDLSRPRV LWIGVSQGAE ELSRVAAAVR AAVDKYAEHV 
EERDFTPHLT VGRLKSSRNV ERLRDLVARY NGVEFGVVEV TSIKLKKSVL TPRGPIYSDL 
FTLNLT