| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1724 |
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| Symbol | |
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| ID | 4909475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1608018 |
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| End bp | 1609253 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640125471 |
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| Product | putative pseudouridylate synthase |
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| Protein accession | YP_001056607 |
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| Protein GI | 126460329 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1258] Predicted pseudouridylate synthase |
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| TIGRFAM ID | [TIGR01213] conserved hypothetical protein TIGR01213 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 0.86816 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGGTAT TAGACAAGGC GCTTGAAATA CTTAGGGCAT ACCCCCTCTG CGACTCGTGC
CTCGGCCGCC AATTTGCCCA ACTGGGCTTC GCCTTGGAAA ACTGGGAAAG GGGCAGGGCG
ATAAAGACGC TGGTTCACAT GAAGCTGGTC AGCGAGTATA GAAGTGGCGC CGACGTTTTA
AACGACTTGG TAAAATTGGC AAAGACTCAC CAGCCCACCC GCAGATTTCT CTCCACGGTG
GGGGTAAAGG CGGAAGAAGA GAAGTGCTAT ATCTGCGGCG GTTTACTCGC TGATGTGGAA
AAGTACGCCG AGAAGGCGGC CGAGGCACTT AGAGGGGTCG AGTTCGAAAC CTTCGAGGTC
GGGTCCTCCC TCCCCCGCGA CATTTTGGAG AGAGAGGGCG AGGTGGTAAA GAGGTTTCTA
ATCACAACGG GGGAGTCGAT AAAGCATGAG ATCAATAGGC GCATTGGGCG AGAGCTTCTA
AGGCGCCTGC CTGGCAAGAA GGTGGAGAAG CTGAGACCCA ACGTAGTTGT AAAAATAGAC
TTTACAACCG GCGACGTTTC GGTGCTGAAA AACCCCGTCC TATTGGAGGG CATCTACCTC
AAGCTCAGCC GTAGGACTTC CCAGGCAAAG AAATTTGGAG GCGTAAAGGC AACTCTACTT
GAGAAACTGC AGTATGTACG CGACATATTC GGCGGCGTGG AGCACGTGAT TCACGCGGGT
GGGCGGGAAG ACGCAGATGC CAGGATGCTC GGTACGGGCA GGCCGGTCGT GGTGGAGGTA
AAGCAGCCGG CAAGATACAG AGCCGACGTG CCTCCGCTGG TGGACAGCGA CGTCGTGTTC
AAGCCGATAG GCTATGTCAA CAGAGAAGAG GTGAGGAGGA TAAAGGAGAA GGCTAAGACG
GACATAAAGC TTTACCGTGC ATTAGTGCTC TCTGAGAGGC CGCTTACTGC GGAGGAGTTG
TCCAAAGTGT CTGAGCTGTC TAGGAGGACG GTGGTTCAAT TTACGCCGAG GAGAATAAAG
AGGCTTAGCC CTAAGAAGAA GAGGGTCAGA ATGGTATACG ACATCCACGC TCGTCTCGTC
TCGCCGCATG TATTTGAGCT GTACGTGAGA TGTCAAGGGG GGCTATATGT AAAAGAGTTT
ATACACGGCG ATGGGGGAAG GACGACCCCC AGCGTTGCTG AGATTTTAAA TGCGCAATTA
GACGTATTGG AGCTAGACGT CTTGGCAGTA GAGTAG
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| Protein sequence | MEVLDKALEI LRAYPLCDSC LGRQFAQLGF ALENWERGRA IKTLVHMKLV SEYRSGADVL
NDLVKLAKTH QPTRRFLSTV GVKAEEEKCY ICGGLLADVE KYAEKAAEAL RGVEFETFEV
GSSLPRDILE REGEVVKRFL ITTGESIKHE INRRIGRELL RRLPGKKVEK LRPNVVVKID
FTTGDVSVLK NPVLLEGIYL KLSRRTSQAK KFGGVKATLL EKLQYVRDIF GGVEHVIHAG
GREDADARML GTGRPVVVEV KQPARYRADV PPLVDSDVVF KPIGYVNREE VRRIKEKAKT
DIKLYRALVL SERPLTAEEL SKVSELSRRT VVQFTPRRIK RLSPKKKRVR MVYDIHARLV
SPHVFELYVR CQGGLYVKEF IHGDGGRTTP SVAEILNAQL DVLELDVLAV E
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