Gene Pcal_1716 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1716 
Symbol 
ID4908235 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1596052 
End bp1597188 
Gene Length1137 bp 
Protein Length378 aa 
Translation table11 
GC content59% 
IMG OID640125463 
Productradical SAM domain-containing protein 
Protein accessionYP_001056599 
Protein GI126460321 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.174012 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGAGCG TGGAGGAGCT CATTAGGCGA TTCCACGAGG CCCCCTTGTT GGTCTTCTGG 
GAGTCCACAA AGGCCTGTCC CCTTGCTTGT AAGCACTGTA GGGCTGACGC AATTTTAAAG
CCTCTCCCGG GCGAGCTGTC AACTGAGGAG GGGAAGAGGC TTATTGAGCA AGTGGCGGAG
TTTGGAGACC CCAAGCCCCT CCTCATTATA ACCGGCGGCG ACCCGTTGAT GAGGGCGGAC
CTCTTCGAGC TTGTGGACTA CGCCAACTCC CTGGGGGTGC CCGTCTCGCT TGCCCCCGCC
GTTTCAAAGA GCTTAGACGA CGAGGCCCTT AGGCGTATCA AGTCTTCTGG CGTCAAGTCT
ATCTCGATAA GCCTAGACGG GGCCACGGCT GAGACTCATG ACGAGTTGAG GGGGGTCCCG
GGTAGCTTTG CTGAGACAGT GTCTGCGATA AAGAGGGCGC TGGACTTGGG CATATCTGTC
CAAGTCAACA CTGTGGTGTG GAAGAAGTCG CTCAGCGAGC TCCCCGACGT GGCGTACCTC
CTCCGCAGGC TCGGGGTAAA GGTGTGGGAG GTCTTCTTCC TCATTGTAAC TGGCAGAGCC
AAGGAGGAGT TGGACATCTC GCCTGCGGAG TACGAGTCCG CTGTTCAGTT CCTTGTCGAC
GTGTCCACCT ACGGGTTCCA AGTCAGAACT GTCGAGGCCC CGTTCTACAG GAGGGCCAAG
CTTGAGAGGT TGCGCGGAAA GGCCTACAGC GATCTCCTTT ACGACAAGCT TGTAGCAAGG
CTGAGGGAGC TTCTGGGCCC GCCTCAGCGG GGCGTTGACC CCACTATTGT GCCCACGCGG
GATGGCTTTG GCATAATCTT CGTGGGGCAC GACGGCACTG TGACCCCAAG CGGCTTCCTC
CCCTACCCCC TGGGCAATGT GCGGAAAAGG CGCCTAGTGG ACATCTACCG CAACCACCCC
CTCCTGGTGA AAATGCGGCG TGGCGAGTTT GAGGGCAGAT GTGGCGTGTG CGAGTATAAG
GACATATGCG GCGGCTCGAG GGCCCGGGCA TTCGCCGTGT TTAAAAACCC GCTGGCGGAG
GACCCAGCCT GCGTTTATAT CCCCAGTAGT TGGAAGAGTG TGGAGATGAC GCGGTGA
 
Protein sequence
MRSVEELIRR FHEAPLLVFW ESTKACPLAC KHCRADAILK PLPGELSTEE GKRLIEQVAE 
FGDPKPLLII TGGDPLMRAD LFELVDYANS LGVPVSLAPA VSKSLDDEAL RRIKSSGVKS
ISISLDGATA ETHDELRGVP GSFAETVSAI KRALDLGISV QVNTVVWKKS LSELPDVAYL
LRRLGVKVWE VFFLIVTGRA KEELDISPAE YESAVQFLVD VSTYGFQVRT VEAPFYRRAK
LERLRGKAYS DLLYDKLVAR LRELLGPPQR GVDPTIVPTR DGFGIIFVGH DGTVTPSGFL
PYPLGNVRKR RLVDIYRNHP LLVKMRRGEF EGRCGVCEYK DICGGSRARA FAVFKNPLAE
DPACVYIPSS WKSVEMTR