Gene Pcal_1696 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1696 
Symbol 
ID4909536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1580120 
End bp1580677 
Gene Length558 bp 
Protein Length185 aa 
Translation table11 
GC content54% 
IMG OID640125443 
ProductRdgB/HAM1 family non-canonical purine NTP pyrophosphatase 
Protein accessionYP_001056579 
Protein GI126460301 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0127] Xanthosine triphosphate pyrophosphatase 
TIGRFAM ID[TIGR00042] non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.000106449 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTATAA GAGTAGCTAC AAGCAACTTG CACAAACTAG CCGAAATTTC GCAGATCTTG 
AAGCCTTTTG GAATAGAGGT GGAGAGACTA GACGCCGAGA AGGTCGAGGT TCAACACGAC 
GATGTGGCAG TCGTAGCAGA AAAGGCAGCT GAGCCTCTGT GTGCCAGGTA CGGGGACTAC 
GTGGTGGTTG AAGACACGGG CTTGTACATA GAGTCGCTTG GGGGCTTCCC CGGCCCCTAT 
GCCGAATACG TCTATAGAAC AATAGGCCTA GCTGGCGTGT TGAAGCTGTT GGAGGGGGTA 
GTCAACCGCG CTGCAGTCTT TAAATGCGCC GCCGCAATAT GCGTAGGCGG CGGTGTAAAA 
GTGTTCATAG GCGAGACTAG GGGCAGAATT GCCCATACGC CAAGGGGGAC CGGCGGCTTT 
GGGTACGACC CCATCTTCAT CCCCGAAGGC GAGGAGAGGA CTTATGCGGA GCTTGGCGCC 
GAGGTAAAAA ACGCCATTTC CCATAGGGCG AAGGCCTTTA AGGCCATGGC GCTTTGGCTA 
GTTAATACAT TTAAATGA
 
Protein sequence
MRIRVATSNL HKLAEISQIL KPFGIEVERL DAEKVEVQHD DVAVVAEKAA EPLCARYGDY 
VVVEDTGLYI ESLGGFPGPY AEYVYRTIGL AGVLKLLEGV VNRAAVFKCA AAICVGGGVK 
VFIGETRGRI AHTPRGTGGF GYDPIFIPEG EERTYAELGA EVKNAISHRA KAFKAMALWL 
VNTFK