Gene Pcal_1693 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1693 
Symbol 
ID4909966 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1575898 
End bp1578684 
Gene Length2787 bp 
Protein Length928 aa 
Translation table11 
GC content55% 
IMG OID640125440 
ProductDEAD/DEAH box helicase domain-containing protein 
Protein accessionYP_001056576 
Protein GI126460298 
COG category[R] General function prediction only 
COG ID[COG1201] Lhr-like helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000881072 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGGTCTTTC ACCTGCTTCA TCCGCTGGTC GTGGAGGCGT TGCGAGAGAG GGGGATAACG 
GAGCCCACGG AGCCTCAGAG GGCGGCTATT CCAGAGGTGC TCTCTGGAAA CAACGTGTTG
ATAATAGCGC CGACTGGTAG CGGGAAGACC GAGGCGGCAA TGTTGCCGAT TCTCTCCAAG
ATGTTGGAGA ACGGAGTGGC CGACAAGTCG GGAATATTTG TGCTCTACAT AACGCCGCTC
CGCGCGCTTA ATAGAGACTT GTTAGATAGG ATAAAGTGGT GGGGCGAGAG GCTGGGGTTC
TCGGTGGATG TGCGCCATGG CGACACTGAT AAGGCAGATA GGCAGAGGCA GAGCCGCAAG
CCTCCCCACA TCTTAATCAC CACCCCCGAG ATGTTGCAAG CCATCTTGAC TGGCAGAAAG
CTTTTGGAAC ATCTGAGGGA GTTGAGGTGG GTCGTCGTAG ACGAGGTCCA CGAATTGGCA
GAGGACAAGA GGGGGGTCCA GCTATCGCTT GCCCTAGAGA GGCTTAGATA CCACGTGGGC
CGCGACTTTC AAATCGTCGG CCTCTCAGCC ACGGTGGGCT CGCCTGTTGA AGTGGCCAAG
TTTCTGGTGG GGGATGGCAG ACCGTTTAAA GTGGTCATGG TGAACTTCGC CCGGCATATA
CAACTGGACG TGGCTAGGCC GCGCGCAAGT GACGAGGACC GCAAATTGGC AGAGGCCAGC
GGCTTGTTCC CCGACGTGGT GGCTCGGCTG AGACTAATAA AGAGGCTTAT TGAAGAGAAT
AGGAGCACTC TCATCTTCAC AAACACTAGG AGCATGGCCG AGCTGTTGGG CTTCCGCCTC
TCCTACCTCT ACGGCGACCT CCCCGTGGCA GTCCACCACT CCTCTCTCTC TAAGATGGTG
AGGATATCGG TGGAGGAGAG GTTGAAGAAG GGCGAGCTAA AGGCGGTGGT GGCTACGTCA
AGTCTCGAGC TTGGGATAGA TATAGGCCAC GTCGACTTAG TCATTCAATA CGTCTCGCCG
CACCAGGCCA CTAGATTGCT ACAGAGGGTG GGCCGCAGCG GCCATAGGCT AAGCGCTGTT
CCAAGGGGCA TTGTAATAGC CGAGGACATC AACGACGTGT TGGAGTCTGT GGTGATTGTG
AGGAGGGCTA AGGCGGGGCT GATAGAGCCG ACGCAGATTC CATACAAGCC TTACGACGTG
TTGGTAAACC AGATAGTGGC GTTCCTCCTC TTAAAGCCCA GGTGGCAGAT TGAGGAGTTG
TACAAAGTAG TGAAAAGGGC GTACCCCTAC CGCGATTTGA CTATGGACGA GCTTAGGAGG
GTGATTAAAT TTATGCAAGA TTTGTACCCG AGGCTTGCCC TCTACTACGA GGACAGCGAC
ACGGTGGTTA GGCCCAGGAG CCGCGGCTTT TACCGCTACT TCTACGAGAC TCTCTCCATG
ATACCCGACG AGAGGCAATA CGCTGTGATA AACGAGAAGA CTGGCGAACT AGTGGGTACA
TTAGACGAGT CCTTTGTCGC AGAGTACGGT GAGGCGGGGG TCAAGTTCAT ATTTAGGGGG
ATGCCCTGGC TCATAACGCG CGTGGACGAA AAAAGCGTGT ACGTAGTAGA GGCGTCTGAC
CCCTCGGGCG CAATACCCAG CTGGGTGGGA GAAGAGATCC CAGTGCCCTT CGAAGTGGCG
CAGGAAGTGG GGATCCTGCG CAGGAGGATT AAAGAAGGCG CAGAGGTGGG CGAGTTGGCG
AGAGAGTATG GAGTCAGCGA GGAGGTCATT AAAGACGCCG CAGAGGAATT GGCAAAGCAT
AGAGGCCCCC TCCCCGACGA TAGGACGGTG GTTATTGAAC AGTACAGGGA AAACATCGTA
ATTGTCCACG CGGCGTTTGG CACCTTGGTC AACAGGACTC TTGGAAAGCT CTTAGGCGAG
TTGTTAATTA GAAGACTTGA GAAGCCGGTG GGAGTTCACC AAGACCCCTA CGGCATAATA
ATACAGTTCT CGGAGCCCCT ATCCGCCGCC ACGGTGGGCG AACTTCTCAA CGCCCTGGCG
CGCATGGACG CCAAAGAGCT GGCCGAACTC TTAAAGTCCG CCCTTGTGAA GTCCGGCTCC
TTCAAGCGCA GGATTTTACA CGTGGCCAAG AGAATGGGTG CGATAGACAA GGAGGCCGAT
GTACACAGCG TAAGTATGTC GAAGCTCGTC GAAGCGTTCA GCGGCACGCC TGTCTTTGAT
GAGGCAATAA GAGAGACTCT CGAAAGAGAC CTGGACTTAG ATCACACGGC TCAAGTCCTC
CAAGACATTG CCAGCGGCAG AATCAAAGTG GTATATTCAG ACGGGCCCAC ATACCTAGGC
GAAGTTCTCT ACGAGAAGAT GTCCCACAGA CTTGAGGTTA TACCGCCGGA GAAGCTCAAG
CGCCTTGTGT TAGACAGCAC TAAGGCGAGG CTTTTAAACT ACACAATGCT CGCGGCGTGT
TTAAACTGCG GCTGGTACGG CCTCGTGAGA GTAGGCGAAG TTGCCGAGCT CAAGTGCCCC
AGGTGCGGCG GCATCGACGT AGGCGTAGTT AGAGTGATCA AAAGCGACAA CTTAGAGCGC
GAAGTGAAGA GAGGCTTGGA GGAGGTCAAG CGGACGTCTG AGATTTTGAA AAAATACGGC
TGGCTAGGCC TATACGCCCT CGCCTCAAAA CTGCCCCTAG ACGCTGTGGA ATATGTCCTA
TCCACCTCGG ACTCCGACTT AAACAAACTC ACTGAGAAAA TACAAGAGGC AGAAAAGGAG
TATCTAAAAC AGAGGTTGCT CGACTAG
 
Protein sequence
MVFHLLHPLV VEALRERGIT EPTEPQRAAI PEVLSGNNVL IIAPTGSGKT EAAMLPILSK 
MLENGVADKS GIFVLYITPL RALNRDLLDR IKWWGERLGF SVDVRHGDTD KADRQRQSRK
PPHILITTPE MLQAILTGRK LLEHLRELRW VVVDEVHELA EDKRGVQLSL ALERLRYHVG
RDFQIVGLSA TVGSPVEVAK FLVGDGRPFK VVMVNFARHI QLDVARPRAS DEDRKLAEAS
GLFPDVVARL RLIKRLIEEN RSTLIFTNTR SMAELLGFRL SYLYGDLPVA VHHSSLSKMV
RISVEERLKK GELKAVVATS SLELGIDIGH VDLVIQYVSP HQATRLLQRV GRSGHRLSAV
PRGIVIAEDI NDVLESVVIV RRAKAGLIEP TQIPYKPYDV LVNQIVAFLL LKPRWQIEEL
YKVVKRAYPY RDLTMDELRR VIKFMQDLYP RLALYYEDSD TVVRPRSRGF YRYFYETLSM
IPDERQYAVI NEKTGELVGT LDESFVAEYG EAGVKFIFRG MPWLITRVDE KSVYVVEASD
PSGAIPSWVG EEIPVPFEVA QEVGILRRRI KEGAEVGELA REYGVSEEVI KDAAEELAKH
RGPLPDDRTV VIEQYRENIV IVHAAFGTLV NRTLGKLLGE LLIRRLEKPV GVHQDPYGII
IQFSEPLSAA TVGELLNALA RMDAKELAEL LKSALVKSGS FKRRILHVAK RMGAIDKEAD
VHSVSMSKLV EAFSGTPVFD EAIRETLERD LDLDHTAQVL QDIASGRIKV VYSDGPTYLG
EVLYEKMSHR LEVIPPEKLK RLVLDSTKAR LLNYTMLAAC LNCGWYGLVR VGEVAELKCP
RCGGIDVGVV RVIKSDNLER EVKRGLEEVK RTSEILKKYG WLGLYALASK LPLDAVEYVL
STSDSDLNKL TEKIQEAEKE YLKQRLLD