Gene Pcal_1683 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1683 
Symbol 
ID4908690 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1568511 
End bp1569173 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content57% 
IMG OID640125430 
Producthypothetical protein 
Protein accessionYP_001056566 
Protein GI126460288 
COG category[S] Function unknown 
COG ID[COG2860] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000472975 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCACGCCG AGGCGGTCCT AGAGGTATTG AACTACGTCG GAATTGTCGC CTTCGCCGTA 
TCTGGGGCAT TAAAGGCAGG GGAGAAGAAC ATGGACTTGC TGGGAGTGAT AACCCTCGGC 
TTCTCCACAG CTTTGGCCGG CGGAATAATA AGAGACGTGC TGTTGGGCAG AGTGCCCCCG 
GTAAACCTAA TCTATTTACC GTATTCCCTG ACGGCTGTGG CCGCCTCCGT GGCCACCTTC 
ATACTATACC CACGCGTCAG ATCATACAAA GACTTATTCC TCTACCCGGA CGCAGTTGGC 
CTCGGCGCAT TCTCTGCGAT AGGCGCAGAC GTAGCGGCTA GCTTCGCCCT GAAACACGGC 
TACTCCGCGT CGGAGAGCTG GTTTTTAGTC GCGGCGCTGG CCTCAATCAC GGCTGCGGGC 
GGCGGAGTAG TGCGGGACGT CCTCGCTGGC GAAATTCCAC AGATCTTGAG AAGAGAGATC 
TACGCAACGG CGGCCGCCGT TGGCGGCATT ATATATTTGG CCACGCTTCC CGCGGGCCGT 
GAGGCCGCCA TGTTTACAAC AATTGCGTCA GTCACAGCCA TTAGGATTGT ATCGCTATGG 
CGTCGTTGGG AACTGCCAAA GATTACGACA CCTGACGCCC AGCCTCTTGT GCACGACGCA 
TAA
 
Protein sequence
MHAEAVLEVL NYVGIVAFAV SGALKAGEKN MDLLGVITLG FSTALAGGII RDVLLGRVPP 
VNLIYLPYSL TAVAASVATF ILYPRVRSYK DLFLYPDAVG LGAFSAIGAD VAASFALKHG 
YSASESWFLV AALASITAAG GGVVRDVLAG EIPQILRREI YATAAAVGGI IYLATLPAGR 
EAAMFTTIAS VTAIRIVSLW RRWELPKITT PDAQPLVHDA